Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1982 116 5e-20
seq368 109 8e-18
seq31 104 3e-16
>seq1982
Length=85936
Score = 116 bits (128), Expect = 5e-20
Identities = 97/116 (84%), Gaps = 2/116 (2%)
Strand=Plus/Minus
Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809
|| || ||| ||| ||||||||| ||||||||||||||||||| |||||| | |||||
Sbjct 42641 GCCGATCTGATCAGCTGGGGCGCCATCGGTGCGCGCACCACCGAAAGCCAGATCCACCGT 42582
Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATT-GGCTTCAAAAACAGCACCGACGGCA 165864
|| ||||| |||||||| | |||||| | |||||||||||| ||||||||||||
Sbjct 42581 GAAATGGCCTCGGCGCTCTC-CTGCCCGGTCGGCTTCAAAAACGGCACCGACGGCA 42527
>seq368
Length=290577
Score = 109 bits (120), Expect = 8e-18
Identities = 164/232 (71%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||| ||||| || || ||||| ||| ||| |||| || ||| ||
Sbjct 115393 ATCTACAAAGTGCTGAAACAAGTGCATCCCGATACCAG-----CATC-TCGTCAAAGGCC 115446
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| || ||||||||| | |||| ||||||| || ||||||
Sbjct 115447 ATGAGTATCATGAACAGCTTCGTCAACGACCTTTTCGAGCGCATCGCCAGCGAGGCTAAC 115506
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| ||||| | | ||||||||| | |||||| || ||||||||||| |||||
Sbjct 115507 CGTCTGGCCCAATACAACAAGCGTAGGACGATCTCCAGTAAAGAGATCCAGACGGCCGTC 115566
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| || | ||| ||| ||| |||||| |||||| ||| ||| |||||||
Sbjct 115567 CGGCTTTTGTTGCCCGGTGAATTGGCCAAGCACGCAGTCAGCGAAGGCACCA 115618
>seq31
Length=1982931
Score = 104 bits (114), Expect = 3e-16
Identities = 163/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||| ||| | ||||| |||||||| |||| | ||||| || | |
Sbjct 1639223 ATCTACAAAGTGTTGAAGCAAGTGCACCCAGACACCGGCGTT---TCCTCAAA---GGCG 1639276
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| ||||||||||| | |||| || |||| |||| || ||
Sbjct 1639277 ATGAGCATCATGAACAGTTTTGTCAACGATCTCTTCGAGCGTATCGCTTCCGAATCCAGT 1639336
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| |||| | || ||||||||| || ||| || || || ||||| ||||||||
Sbjct 1639337 CGTTTGGCTCACTACAACAAGCGTTCGACCATCACCAGTCGGGAAATCCAAACCGCCGTC 1639396
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| |||||| |||||| |||||||||| ||||| ||||
Sbjct 1639397 CGCCTCTTGTTGCCCGGCGAGTTGGCCAAGCACGCCGTCAGTGAGGGAACCA 1639448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7175503589775850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |