Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1982 116 5e-20 seq368 109 8e-18 seq31 104 3e-16 >seq1982 Length=85936 Score = 116 bits (128), Expect = 5e-20 Identities = 97/116 (84%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || || ||| ||| ||||||||| ||||||||||||||||||| |||||| | ||||| Sbjct 42641 GCCGATCTGATCAGCTGGGGCGCCATCGGTGCGCGCACCACCGAAAGCCAGATCCACCGT 42582 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATT-GGCTTCAAAAACAGCACCGACGGCA 165864 || ||||| |||||||| | |||||| | |||||||||||| |||||||||||| Sbjct 42581 GAAATGGCCTCGGCGCTCTC-CTGCCCGGTCGGCTTCAAAAACGGCACCGACGGCA 42527 >seq368 Length=290577 Score = 109 bits (120), Expect = 8e-18 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||||| || || ||||| ||| ||| |||| || ||| || Sbjct 115393 ATCTACAAAGTGCTGAAACAAGTGCATCCCGATACCAG-----CATC-TCGTCAAAGGCC 115446 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||| | |||| ||||||| || |||||| Sbjct 115447 ATGAGTATCATGAACAGCTTCGTCAACGACCTTTTCGAGCGCATCGCCAGCGAGGCTAAC 115506 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | | ||||||||| | |||||| || ||||||||||| ||||| Sbjct 115507 CGTCTGGCCCAATACAACAAGCGTAGGACGATCTCCAGTAAAGAGATCCAGACGGCCGTC 115566 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| ||| ||| |||||| |||||| ||| ||| ||||||| Sbjct 115567 CGGCTTTTGTTGCCCGGTGAATTGGCCAAGCACGCAGTCAGCGAAGGCACCA 115618 >seq31 Length=1982931 Score = 104 bits (114), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||| | ||||| |||||||| |||| | ||||| || | | Sbjct 1639223 ATCTACAAAGTGTTGAAGCAAGTGCACCCAGACACCGGCGTT---TCCTCAAA---GGCG 1639276 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| ||||||||||| | |||| || |||| |||| || || Sbjct 1639277 ATGAGCATCATGAACAGTTTTGTCAACGATCTCTTCGAGCGTATCGCTTCCGAATCCAGT 1639336 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | || ||||||||| || ||| || || || ||||| |||||||| Sbjct 1639337 CGTTTGGCTCACTACAACAAGCGTTCGACCATCACCAGTCGGGAAATCCAAACCGCCGTC 1639396 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| |||||| |||||| |||||||||| ||||| |||| Sbjct 1639397 CGCCTCTTGTTGCCCGGCGAGTTGGCCAAGCACGCCGTCAGTGAGGGAACCA 1639448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175503589775850