Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2302 95.1 1e-14 >seq2302 Length=121279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||||||||| || | ||| || |||||||||||||| |||| Sbjct 52964 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53023 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || || ||||| || ||||| ||||| || |||||||| | || Sbjct 53024 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53083 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||| ||| | | || | | | || ||||||||| Sbjct 53084 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACC 53143 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || || | || || || || || ||||| Sbjct 53144 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53190 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||||||||| || | ||| || |||||||||||||| |||| Sbjct 53192 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53251 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || || ||||| || ||||| ||||| || |||||||| | || Sbjct 53252 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53311 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||| ||| | | || | | | || ||||||||| Sbjct 53312 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACC 53371 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || || | || || || || || ||||| Sbjct 53372 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||||||||| || | ||| || |||||||||||||| |||| Sbjct 53648 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53707 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || || ||||| || ||||| ||||| || |||||||| | || Sbjct 53708 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53767 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||| ||| | | || | | | || ||||||||| Sbjct 53768 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 53827 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || || | || || || || || ||||| Sbjct 53828 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| || || | ||| || || || |||||||| || | Sbjct 54332 CCACCACGGAGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAA 54391 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || ||||| || ||||| ||||| || || ||||| | ||| Sbjct 54392 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGA 54451 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| |||||| || | | || | | | || || || || Sbjct 54452 ATACCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACT 54511 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| |||||||| ||||||||||| ||||| |||||||| Sbjct 54512 TCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 54558 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||||||||| || | ||| || |||||||||||||| |||| Sbjct 53420 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53479 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || || ||||| || ||||| ||||| || || ||||| | || Sbjct 53480 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 53539 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||| ||| | | || | | | || ||||||||| Sbjct 53540 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 53599 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || || | || || || || || ||||| Sbjct 53600 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53646 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||||||||| || | ||| || |||||||||||||| |||| Sbjct 53876 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53935 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || || ||||| || ||||| ||||| || || || || | || Sbjct 53936 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 53995 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||| ||| | | || | | | || ||||||||| Sbjct 53996 ATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACT 54055 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || || | || || || || |||||||| Sbjct 54056 TCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||||||||| || | ||| || |||||||||||||| |||| Sbjct 54104 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 54163 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || || ||||| || ||||| ||||| || || ||||| | || Sbjct 54164 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 54223 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| |||||| || | | || | | | || ||||||||| Sbjct 54224 ATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACC 54283 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || || | || || ||||| || ||||| Sbjct 54284 TCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450658784539000