Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq35 132 7e-26 seq1042 120 4e-22 seq757 104 3e-17 seq1088 100 4e-16 seq474 100 4e-16 seq1089 95.1 2e-14 seq7356 87.8 2e-12 seq989 87.8 2e-12 >seq35 Length=1961283 Score = 132 bits (146), Expect = 7e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 |||| || |||||| || ||||| | ||||||||||||||||| || ||||| ||| Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || || || || ||||||||||| || ||||| | ||| || ||| | | |||||||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATG 40050 | | ||||||||| || || ||||| ||| ||||||||||| ||||| || Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 1196659 Score = 125 bits (138), Expect = 1e-23 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||| | || || ||| || | || ||||||| || | || | Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||||| ||||||||| |||||| || || || ||||| ||||| ||||||| Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013 Query 39759 CAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 |||| | || || || || ||| || || | ||||| || | |||||||| | Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | ||||| |||||||| ||||| ||||| ||||||||||| Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAA 1196913 >seq1042 Length=111944 Score = 120 bits (132), Expect = 4e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||||| ||||||||||||||| | ||||||||||||||||| || || || ||| Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || || || || ||||||||||| || ||||| | ||| || ||| | |||||| || Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 | | ||||||| | ||||| |||| ||| || |||||||| Sbjct 80647 ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGC 80690 >seq757 Length=226151 Score = 104 bits (114), Expect = 3e-17 Identities = 102/129 (79%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 ||||||||||| | |||||||||||| || ||||||||||| ||||| ||||| ||||| Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTT- 68879 ||||| | || || |||||||| ||| ||| | ||||| ||||||| || ||| Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTA-ATATTTC 204756 Query 68880 CCAATCCCA 68888 ||||| ||| Sbjct 204755 CCAATTCCA 204747 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || ||||| ||||| | |||||||||| | ||||||||| || ||| Sbjct 201156 AAATCGTCGCCCCAGACATCTGAAAGACCAGGACATTTACGTGGACACATTAAACTCCAA 201097 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | || | ||| ||| ||| |||||||| ||| || ||||||||||| | ||| | | Sbjct 201096 GATTGATTAGCCTCAACACGTCTCATAAATTCATCAGGTATCCAAAGAGCCAAAAATAAA 201037 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTATTTTT 69674 ||||| ||| | | ||||| ||| || |||||||| Sbjct 201036 TCTCTAGTTTTTTCTTCTTTATTGCCAGTATTTTT 201002 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||||||||||||||| | | || || ||| | | |||| | | || ||||||| Sbjct 205329 TCCATCCGTAGAAATGTACAGATGATATTTTACTAATAGTTGGTTGCTCAATGTGAATAT 205270 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || ||| |||||| ||| | ||||||| |||||| ||||| | || || | | Sbjct 205269 TTAATGACTGAGATTGATCAATGTATGCTCCTCGATCTGCAGCCATATCTAATATTATTT 205210 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 |||||| | ||||||| | || ||| | | | ||| |||| ||||||| Sbjct 205209 TTTGAGATAGTTCCCAATTTGTTTTATATAATTCTTTAATATTGTCTGGAA 205159 >seq1088 Length=178471 Score = 100 bits (110), Expect = 4e-16 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 163289 AATTAAAGATGATTAAAATTAGTAAGGATCCaaaaaaaGTACCAGAGTGGTTGGTAGTTA 163348 ||||||| ||||| ||||||||||| |||||| ||||||| ||||||||||| | | Sbjct 145422 AATTAAAAATGATCAAAATTAGTAAAGATCCAGAAAAAGTTCCAGAGTGGTTAAAATGCA 145363 Query 163349 ATAAAATCTAT-ATTCCAGATTTTGTAGCAGAGGATCCAAAA 163389 ||||| |||| ||||| |||||||||||||| ||||| ||| Sbjct 145362 CTAAAA-CTATGATTCCGGATTTTGTAGCAGAAGATCCTAAA 145322 >seq474 Length=173882 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || ||||| ||||| | |||||||||| | ||||||||| || ||| Sbjct 164332 AAATCGTCGCCCCAGACATCTGAAAGACCAGGACATTTACGTGGACACATTAAGCTCCAA 164273 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | |||| ||| ||| ||| |||||||| ||| || ||||||||||||| ||| | | Sbjct 164272 GATTGATCAGCCTCAACACGTCTCATAAATTCATCAGGTATCCAAAGAGCTAAAAATAAA 164213 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTATTTTT 69674 ||||| ||| | | ||||| ||| || |||||||| Sbjct 164212 TCTCTAGTTTTTTCTTCTTTATTACCGGTATTTTT 164178 >seq1089 Length=106908 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || ||||| ||||| | |||||||||| | ||||||||| || ||| Sbjct 32046 AAATCGTCGCCCCAGACATCTGAAAGACCAGGACATTTACGTGGACACATTAAGCTCCAA 32105 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | || | ||| ||| ||| |||||||| ||| || ||||||||||||| ||| | | Sbjct 32106 GATTGATTAGCCTCAACACGTCTCATAAATTCATCAGGTATCCAAAGAGCTAAAAATAAA 32165 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTATTTTT 69674 ||||| ||| | | ||||| ||| || |||||||| Sbjct 32166 TCTCTAGTTTTTTCTTCTTTATTACCGGTATTTTT 32200 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005 |||||| | ||| | | ||||| ||| | | |||||||| |||||||| || ||||| Sbjct 31085 TGATCCTTGATAAGATGAATAAGTTCCATATTTTTCAGCTAACTCACAACTAGCTTCTAA 31144 Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATC 69065 |||||| ||||| | || || || || | ||| || | | || ||| || | Sbjct 31145 TGCACCATAATACAAGGTCTCAAATATTTGTGAATTTAGCTTTCTTGATTCAGGAGAGCC 31204 Query 69066 GAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125 |||||| | | | | | |||| |||||| || || || || ||||| || | ||| Sbjct 31205 AAATGGAAATCGCATCAATAAAAATAAATCTGCTAAACCTTGTACGCCAATCCCAACAGG 31264 Query 69126 TCTATGTCTCTTATTTGAACTTTCAGC 69152 | ||||| ||||||||| ||||||| Sbjct 31265 ACGATGTCGTTTATTTGAAGTTTCAGC 31291 >seq7356 Length=7625 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 |||||||| || ||||| | | |||||||||||||||||| ||||| ||||| || Sbjct 4489 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 4430 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 |||||| |||||| ||| | | || |||| | |||||| | |||| || ||||| Sbjct 4429 ATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGGATA 4370 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGAT 69122 | ||||||| |||||| ||||| || | ||||| || || Sbjct 4369 TCTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAAT 4322 >seq989 Length=145162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68982 AGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT 69041 |||||||||||||||||| ||||| ||||| |||||||| | |||| ||| | | || Sbjct 126942 AGCTAGTTCACAACTTGCTTCTAAAGCACCATAATAAATAGATTCGTGAATTTGTGTGTT 126883 Query 69042 GAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAA 69101 ||| || |||||| | |||| || ||||| | | ||||||| |||||| || Sbjct 126882 AAGAACTCTAGCTTCTTTATTATCAAAAGGATATTTCATTTTAATAAATAAATCTGCTAA 126823 Query 69102 TCCCTGAACCCCAATACCGAT 69122 ||| || || ||||| || || Sbjct 126822 TCCTTGGACACCAATTCCAAT 126802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686703371337000