Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq35 132 7e-26
seq1042 120 4e-22
seq757 104 3e-17
seq1088 100 4e-16
seq474 100 4e-16
seq1089 95.1 2e-14
seq7356 87.8 2e-12
seq989 87.8 2e-12
>seq35
Length=1961283
Score = 132 bits (146), Expect = 7e-26
Identities = 133/173 (77%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937
|||| || |||||| || ||||| | ||||||||||||||||| || ||||| |||
Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772
Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997
|| || || || ||||||||||| || ||||| | ||| || ||| | | ||||||||
Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712
Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATG 40050
| | ||||||||| || || ||||| ||| ||||||||||| ||||| ||
Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 1196659
Score = 125 bits (138), Expect = 1e-23
Identities = 160/220 (73%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||| | || || ||| || | || ||||||| || | || |
Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| | |||||||| ||||||||| |||||| || || || ||||| ||||| |||||||
Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013
Query 39759 CAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAG 39815
|||| | || || || || ||| || || | ||||| || | |||||||| |
Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953
Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855
| ||||| |||||||| ||||| ||||| |||||||||||
Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAA 1196913
>seq1042
Length=111944
Score = 120 bits (132), Expect = 4e-22
Identities = 125/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937
||||||| ||||||||||||||| | ||||||||||||||||| || || || |||
Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586
Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997
|| || || || ||||||||||| || ||||| | ||| || ||| | |||||| ||
Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646
Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041
| | ||||||| | ||||| |||| ||| || ||||||||
Sbjct 80647 ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGC 80690
>seq757
Length=226151
Score = 104 bits (114), Expect = 3e-17
Identities = 102/129 (79%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820
||||||||||| | |||||||||||| || ||||||||||| ||||| ||||| |||||
Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815
Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTT- 68879
||||| | || || |||||||| ||| ||| | ||||| ||||||| || |||
Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTA-ATATTTC 204756
Query 68880 CCAATCCCA 68888
||||| |||
Sbjct 204755 CCAATTCCA 204747
Score = 91.5 bits (100), Expect = 2e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579
|| || || ||||| ||||| | |||||||||| | ||||||||| || |||
Sbjct 201156 AAATCGTCGCCCCAGACATCTGAAAGACCAGGACATTTACGTGGACACATTAAACTCCAA 201097
Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639
| || | ||| ||| ||| |||||||| ||| || ||||||||||| | ||| | |
Sbjct 201096 GATTGATTAGCCTCAACACGTCTCATAAATTCATCAGGTATCCAAAGAGCCAAAAATAAA 201037
Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTATTTTT 69674
||||| ||| | | ||||| ||| || ||||||||
Sbjct 201036 TCTCTAGTTTTTTCTTCTTTATTGCCAGTATTTTT 201002
Score = 84.2 bits (92), Expect = 3e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||||||||||||||| | | || || ||| | | |||| | | || |||||||
Sbjct 205329 TCCATCCGTAGAAATGTACAGATGATATTTTACTAATAGTTGGTTGCTCAATGTGAATAT 205270
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | || ||| |||||| ||| | ||||||| |||||| ||||| | || || | |
Sbjct 205269 TTAATGACTGAGATTGATCAATGTATGCTCCTCGATCTGCAGCCATATCTAATATTATTT 205210
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
|||||| | ||||||| | || ||| | | | ||| |||| |||||||
Sbjct 205209 TTTGAGATAGTTCCCAATTTGTTTTATATAATTCTTTAATATTGTCTGGAA 205159
>seq1088
Length=178471
Score = 100 bits (110), Expect = 4e-16
Identities = 85/102 (83%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 163289 AATTAAAGATGATTAAAATTAGTAAGGATCCaaaaaaaGTACCAGAGTGGTTGGTAGTTA 163348
||||||| ||||| ||||||||||| |||||| ||||||| ||||||||||| | |
Sbjct 145422 AATTAAAAATGATCAAAATTAGTAAAGATCCAGAAAAAGTTCCAGAGTGGTTAAAATGCA 145363
Query 163349 ATAAAATCTAT-ATTCCAGATTTTGTAGCAGAGGATCCAAAA 163389
||||| |||| ||||| |||||||||||||| ||||| |||
Sbjct 145362 CTAAAA-CTATGATTCCGGATTTTGTAGCAGAAGATCCTAAA 145322
>seq474
Length=173882
Score = 100 bits (110), Expect = 4e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579
|| || || ||||| ||||| | |||||||||| | ||||||||| || |||
Sbjct 164332 AAATCGTCGCCCCAGACATCTGAAAGACCAGGACATTTACGTGGACACATTAAGCTCCAA 164273
Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639
| |||| ||| ||| ||| |||||||| ||| || ||||||||||||| ||| | |
Sbjct 164272 GATTGATCAGCCTCAACACGTCTCATAAATTCATCAGGTATCCAAAGAGCTAAAAATAAA 164213
Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTATTTTT 69674
||||| ||| | | ||||| ||| || ||||||||
Sbjct 164212 TCTCTAGTTTTTTCTTCTTTATTACCGGTATTTTT 164178
>seq1089
Length=106908
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579
|| || || ||||| ||||| | |||||||||| | ||||||||| || |||
Sbjct 32046 AAATCGTCGCCCCAGACATCTGAAAGACCAGGACATTTACGTGGACACATTAAGCTCCAA 32105
Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639
| || | ||| ||| ||| |||||||| ||| || ||||||||||||| ||| | |
Sbjct 32106 GATTGATTAGCCTCAACACGTCTCATAAATTCATCAGGTATCCAAAGAGCTAAAAATAAA 32165
Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTATTTTT 69674
||||| ||| | | ||||| ||| || ||||||||
Sbjct 32166 TCTCTAGTTTTTTCTTCTTTATTACCGGTATTTTT 32200
Score = 86.0 bits (94), Expect = 9e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005
|||||| | ||| | | ||||| ||| | | |||||||| |||||||| || |||||
Sbjct 31085 TGATCCTTGATAAGATGAATAAGTTCCATATTTTTCAGCTAACTCACAACTAGCTTCTAA 31144
Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATC 69065
|||||| ||||| | || || || || | ||| || | | || ||| || |
Sbjct 31145 TGCACCATAATACAAGGTCTCAAATATTTGTGAATTTAGCTTTCTTGATTCAGGAGAGCC 31204
Query 69066 GAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125
|||||| | | | | | |||| |||||| || || || || ||||| || | |||
Sbjct 31205 AAATGGAAATCGCATCAATAAAAATAAATCTGCTAAACCTTGTACGCCAATCCCAACAGG 31264
Query 69126 TCTATGTCTCTTATTTGAACTTTCAGC 69152
| ||||| ||||||||| |||||||
Sbjct 31265 ACGATGTCGTTTATTTGAAGTTTCAGC 31291
>seq7356
Length=7625
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014
|||||||| || ||||| | | |||||||||||||||||| ||||| ||||| ||
Sbjct 4489 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 4430
Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074
|||||| |||||| ||| | | || |||| | |||||| | |||| || |||||
Sbjct 4429 ATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGGATA 4370
Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGAT 69122
| ||||||| |||||| ||||| || | ||||| || ||
Sbjct 4369 TCTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAAT 4322
>seq989
Length=145162
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68982 AGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT 69041
|||||||||||||||||| ||||| ||||| |||||||| | |||| ||| | | ||
Sbjct 126942 AGCTAGTTCACAACTTGCTTCTAAAGCACCATAATAAATAGATTCGTGAATTTGTGTGTT 126883
Query 69042 GAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAA 69101
||| || |||||| | |||| || ||||| | | ||||||| |||||| ||
Sbjct 126882 AAGAACTCTAGCTTCTTTATTATCAAAAGGATATTTCATTTTAATAAATAAATCTGCTAA 126823
Query 69102 TCCCTGAACCCCAATACCGAT 69122
||| || || ||||| || ||
Sbjct 126822 TCCTTGGACACCAATTCCAAT 126802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686703371337000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |