Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq14394 113 1e-20 >seq14394 Length=813 Score = 113 bits (124), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 17845 GTAGCGGATGCCTCACT--ATCACATAGTGATGGTTCATTACTGCTTTGTAGAATGGACA 17902 |||| ||||| ||||| ||| | | ||||||| ||||| ||| | || || ||||| Sbjct 238 GTAGTCGATGCGTCACTGAATC-CGT-GTGATGGCTCATTGCTGGTATGCAGGATGGAAG 295 Query 17903 GAGAACTGAGGATAAAAAGATATCCCAAAACCCCAAAAGCTCATCTTTAGGATTTGCAGA 17962 | || ||||||||||| | |||| || ||| | | || ||| | |||||||||| Sbjct 296 GCGAGCTGAGGATAAAGCGCTATCGTAAGCATCCACAGCCACACCTTGAAGATTTGCAGA 355 Query 17963 AAGGTAGTCATGAACAGATACCTGCGCATGAAGACGGAACTAGTCCAGATGTGATATTTG 18022 || || | ||| ||||||| | || || |||||||| || || |||| || |||| Sbjct 356 CTGGCAGGCGAGAAGAGATACCAGTTCACGATGACGGAACGAGCCCGGATGCTATCTTTG 415 Query 18023 TGGTGATCGCATACATCATCAACGATGCTCGTTATGGTGAGTTTGATGACTACCC 18077 ||||||| ||||| |||||||||| | ||||||||||| || | ||| Sbjct 416 GGGTGATCACATACTGCATCAACGATATGAGGGCGGGTGAGTTTGACGATTGCCC 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123817612258400