Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq430 143 2e-29 seq1042 113 4e-20 seq35 109 4e-19 seq225 102 6e-17 >seq430 Length=650307 Score = 143 bits (158), Expect = 2e-29 Identities = 240/343 (70%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 |||||| | || ||||||||||||||||| | |||||||| ||| || | |||| Sbjct 88325 AGGTGACTTGGGACCTGTTTATGGATTTCAATGGCGACATTATGGTGCTGAGTATGTAGA 88266 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 | || | ||||||| | ||||| || |||||| | || ||| || |||| || Sbjct 88265 TGTGCATACTGATTACTCTGGAAAAGGCATTGATCAACTTCAAAACGTCATCAATACAAT 88206 Query 40985 TAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 ||| | | || |||||| ||| || | || ||| ||||| ||| || || Sbjct 88205 CAAAACTAACCCTGACGATAGGCGA---ATGCTTATGATCGCATGGAATCCATGTGATGT 88149 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTG 41100 || | ||||| || ||||| ||||| |||| || ||||||| || | |||| Sbjct 88148 ACCTAAAATGGCCTTACCACCGTGTCA-TTGTCTGGTACAGTTTTTTGTCGCCGATGGCT 88090 Query 41101 AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACA 41160 | ||||| |||||| |||| ||| |||||| |||||||| ||||| || || ||||| | Sbjct 88089 ATCTGTCGTGTCAAATGTACCAACGATCAGCAGACATGGGTCTAGGAGTACCCTTTAATA 88030 Query 41161 TAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | || |||||| | | || || |||||||| || || ||||| Sbjct 88029 TTGCCAGTTATTCATTACTTACATATATGATAGCCCATGTTAC 87987 >seq1042 Length=111944 Score = 113 bits (124), Expect = 4e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 || |||||||| | | | || ||||| ||||| | || ||||| | ||||||| Sbjct 80711 CACTTTATATCCTACATACTAGCATTTTTAGCTGCTTCAAATGGCATAGTTAGTGAAAAT 80652 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 | |||| || ||| | |||||||||||| || | || || |||||||||||||||| Sbjct 80651 CTTGTTAAACGATTTTCTCAAGAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGGTTC 80592 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||| ||||| ||||| ||||| |||||||| || | | |||||||| || || Sbjct 80591 CAAATAATGATAGAGAATATACATTCAGAAATGTATAGCTTATTAATAGATACATATATT 80532 Query 44015 AAAGA 44019 ||||| Sbjct 80531 AAAGA 80527 >seq35 Length=1961283 Score = 109 bits (120), Expect = 4e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 || ||||||||| || || || ||||||||||| || || || |||||||||||| Sbjct 1196647 CACTTTATATCTCACGTATTAGCATTTTTTGCTGCTTCAGATGGCATTGTCAATGAAAAT 1196706 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 | ||| | || | |||||||||||| || | || || |||||||||||||||| Sbjct 1196707 CTTGTTGAAAGATTCTCTCAAGAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGGTTC 1196766 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAG 43992 ||||| || |||||||| ||||| |||||||| || Sbjct 1196767 CAAATAATGATGGAAAATATACATTCAGAAATGTATAG 1196804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 || |||||||| || ||||| | || || | | ||| | || ||||| ||||| ||||| Sbjct 1196910 TTATTTAATGCTATTGAAACCATGCCGTGTG-TAAAAAAGAAGGCAGATTGGGCTCTTAA 1196968 Query 44098 ATGGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 |||||| | || || | ||||||| ||| | | || || ||||| | || || Sbjct 1196969 ATGGATCAGTGATAGTAAAGCAACTTTTGGTGAAAGGTTAGTTGCATTTGCTGCAGTTGA 1197028 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| || || || || ||| ||||| || |||||||||| |||||| |||| || || Sbjct 1197029 AGGTATATTTTTCTCTGGAAGTTTTGCTGCATTATTTTGGTTGAAGAAAAGAGGATTAAT 1197088 Query 44215 GCCTGGGTTGACGTTTTCAAATGAG 44239 ||| || || || ||| |||||| Sbjct 1197089 GCCAGGTTTAACTTTTAGCAATGAG 1197113 >seq225 Length=1067286 Score = 102 bits (112), Expect = 6e-17 Identities = 130/178 (73%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 19352 TTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAAT 19411 ||||||| | ||| ||||| || ||| ||||||||||| || ||| || || | || Sbjct 324601 TTTTGCTATTTGGTCCACCTGGAACTGGTAAAACATTAATGGCTAGACAAATTGGACAAA 324660 Query 19412 TACTTACAAAACAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATG 19468 | | ||| || | ||||||||||| ||||| ||| |||| || | ||||||| Sbjct 324661 TGTT---AAATGCACGTGAACCCAAAATTGTTAATGGCCCTCAAATTTTGGACAAATATG 324717 Query 19469 TAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526 | ||| |||| |||| |||| || || | || || || || |||||||||||| |||| Sbjct 324718 TTGGTGAATCTGAAGCAAATATAAGAAGATTATTCGCAGATGCTGAAGAAGAAGAAAA 324775 Score = 100 bits (110), Expect = 2e-16 Identities = 120/162 (74%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608 ||||| || || ||| | |||||| | || || || ||||| ||||||||||| || | Sbjct 324855 TTGCATATAATCATATTTGATGAAATTGATGCTATTTGTAAAGCAAGAGGTTCTGTTGGA 324914 Query 19609 ---AAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| ||||| || |||||||| || ||||| | || | ||| | || || ||| Sbjct 324915 GGGAATACAGGAGTGCACGACACTGTGGTTAATCAGTTGTTGGCTAAAATTGATGGAGTT 324974 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 | ||||| ||||| || |||||||| || |||||||||||| Sbjct 324975 GAGCAACTAAATAACATCTTAGTTATAGGTATGACTAATAGA 325016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397340107419625