Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq430 143 2e-29
seq1042 113 4e-20
seq35 109 4e-19
seq225 102 6e-17
>seq430
Length=650307
Score = 143 bits (158), Expect = 2e-29
Identities = 240/343 (70%), Gaps = 8/343 (2%)
Strand=Plus/Minus
Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924
|||||| | || ||||||||||||||||| | |||||||| ||| || | ||||
Sbjct 88325 AGGTGACTTGGGACCTGTTTATGGATTTCAATGGCGACATTATGGTGCTGAGTATGTAGA 88266
Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984
| || | ||||||| | ||||| || |||||| | || ||| || |||| ||
Sbjct 88265 TGTGCATACTGATTACTCTGGAAAAGGCATTGATCAACTTCAAAACGTCATCAATACAAT 88206
Query 40985 TAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041
||| | | || |||||| ||| || | || ||| ||||| ||| || ||
Sbjct 88205 CAAAACTAACCCTGACGATAGGCGA---ATGCTTATGATCGCATGGAATCCATGTGATGT 88149
Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTG 41100
|| | ||||| || ||||| ||||| |||| || ||||||| || | ||||
Sbjct 88148 ACCTAAAATGGCCTTACCACCGTGTCA-TTGTCTGGTACAGTTTTTTGTCGCCGATGGCT 88090
Query 41101 AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACA 41160
| ||||| |||||| |||| ||| |||||| |||||||| ||||| || || ||||| |
Sbjct 88089 ATCTGTCGTGTCAAATGTACCAACGATCAGCAGACATGGGTCTAGGAGTACCCTTTAATA 88030
Query 41161 TAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
| || |||||| | | || || |||||||| || || |||||
Sbjct 88029 TTGCCAGTTATTCATTACTTACATATATGATAGCCCATGTTAC 87987
>seq1042
Length=111944
Score = 113 bits (124), Expect = 4e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894
|| |||||||| | | | || ||||| ||||| | || ||||| | |||||||
Sbjct 80711 CACTTTATATCCTACATACTAGCATTTTTAGCTGCTTCAAATGGCATAGTTAGTGAAAAT 80652
Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954
| |||| || ||| | |||||||||||| || | || || ||||||||||||||||
Sbjct 80651 CTTGTTAAACGATTTTCTCAAGAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGGTTC 80592
Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014
||||| ||||| ||||| ||||| |||||||| || | | |||||||| || ||
Sbjct 80591 CAAATAATGATAGAGAATATACATTCAGAAATGTATAGCTTATTAATAGATACATATATT 80532
Query 44015 AAAGA 44019
|||||
Sbjct 80531 AAAGA 80527
>seq35
Length=1961283
Score = 109 bits (120), Expect = 4e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894
|| ||||||||| || || || ||||||||||| || || || ||||||||||||
Sbjct 1196647 CACTTTATATCTCACGTATTAGCATTTTTTGCTGCTTCAGATGGCATTGTCAATGAAAAT 1196706
Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954
| ||| | || | |||||||||||| || | || || ||||||||||||||||
Sbjct 1196707 CTTGTTGAAAGATTCTCTCAAGAAGTTCAAGTAACTGAGGCTAGATGTTTTTATGGGTTC 1196766
Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAG 43992
||||| || |||||||| ||||| |||||||| ||
Sbjct 1196767 CAAATAATGATGGAAAATATACATTCAGAAATGTATAG 1196804
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/205 (71%), Gaps = 5/205 (2%)
Strand=Plus/Plus
Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097
|| |||||||| || ||||| | || || | | ||| | || ||||| ||||| |||||
Sbjct 1196910 TTATTTAATGCTATTGAAACCATGCCGTGTG-TAAAAAAGAAGGCAGATTGGGCTCTTAA 1196968
Query 44098 ATGGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154
|||||| | || || | ||||||| ||| | | || || ||||| | || ||
Sbjct 1196969 ATGGATCAGTGATAGTAAAGCAACTTTTGGTGAAAGGTTAGTTGCATTTGCTGCAGTTGA 1197028
Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214
||| || || || || ||| ||||| || |||||||||| |||||| |||| || ||
Sbjct 1197029 AGGTATATTTTTCTCTGGAAGTTTTGCTGCATTATTTTGGTTGAAGAAAAGAGGATTAAT 1197088
Query 44215 GCCTGGGTTGACGTTTTCAAATGAG 44239
||| || || || ||| ||||||
Sbjct 1197089 GCCAGGTTTAACTTTTAGCAATGAG 1197113
>seq225
Length=1067286
Score = 102 bits (112), Expect = 6e-17
Identities = 130/178 (73%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 19352 TTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAAT 19411
||||||| | ||| ||||| || ||| ||||||||||| || ||| || || | ||
Sbjct 324601 TTTTGCTATTTGGTCCACCTGGAACTGGTAAAACATTAATGGCTAGACAAATTGGACAAA 324660
Query 19412 TACTTACAAAACAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATG 19468
| | ||| || | ||||||||||| ||||| ||| |||| || | |||||||
Sbjct 324661 TGTT---AAATGCACGTGAACCCAAAATTGTTAATGGCCCTCAAATTTTGGACAAATATG 324717
Query 19469 TAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526
| ||| |||| |||| |||| || || | || || || || |||||||||||| ||||
Sbjct 324718 TTGGTGAATCTGAAGCAAATATAAGAAGATTATTCGCAGATGCTGAAGAAGAAGAAAA 324775
Score = 100 bits (110), Expect = 2e-16
Identities = 120/162 (74%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608
||||| || || ||| | |||||| | || || || ||||| ||||||||||| || |
Sbjct 324855 TTGCATATAATCATATTTGATGAAATTGATGCTATTTGTAAAGCAAGAGGTTCTGTTGGA 324914
Query 19609 ---AAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
||| ||||| || |||||||| || ||||| | || | ||| | || || |||
Sbjct 324915 GGGAATACAGGAGTGCACGACACTGTGGTTAATCAGTTGTTGGCTAAAATTGATGGAGTT 324974
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704
| ||||| ||||| || |||||||| || ||||||||||||
Sbjct 324975 GAGCAACTAAATAACATCTTAGTTATAGGTATGACTAATAGA 325016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397340107419625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |