Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq276 104 2e-17 seq2302 96.9 3e-15 >seq276 Length=376631 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| || || | || || ||||| |||||||| |||||| | | || | ||||| Sbjct 240721 TACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTC 240662 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | || || ||||| |||| | ||||||||||| || || | || ||||| || Sbjct 240661 CAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG 240602 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || ||||| |||| | || ||||| | ||| ||||| | |||||| | ||| Sbjct 240601 AATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTT 240542 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||||||||||||||||||||| Sbjct 240541 TCCAGTAAGAGTTTTCACAAAGATTTGCAT 240512 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| || || | || || ||||| |||||||| |||||| | | || | ||||| Sbjct 240949 TACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTC 240890 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | || || ||||| |||| | ||||||||||| || || | || ||||| || Sbjct 240889 CAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG 240830 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || ||||| |||| | || ||||| | ||| ||||| | ||| || | ||| Sbjct 240829 AATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTT 240770 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || |||||||||||||||||||| Sbjct 240769 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| || || | || || ||||| |||||||| |||||| | | || | ||||| Sbjct 241405 TACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTC 241346 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | || || ||||| |||| | ||||||||||| || || | || ||||| || Sbjct 241345 CAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTG 241286 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || ||||| |||| | || ||||| | ||| ||||| | ||| || | ||| Sbjct 241285 AATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTT 241226 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || |||||||||||||||||||| Sbjct 241225 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| || || | || || ||||| |||||||| |||||| | | || | ||||| Sbjct 241633 TACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTC 241574 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | || || ||||| |||| | ||||||||||| || || | || ||||| || Sbjct 241573 CAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTG 241514 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || ||||| |||| | || ||||| | ||| ||||| | ||| || | ||| Sbjct 241513 AATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTT 241454 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || |||||||||||||||||||| Sbjct 241453 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 ||| || || | || || ||||| |||||||| ||||| | | | || || | |||| Sbjct 241177 TACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGC-CATCTT 241119 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | || || ||||| |||| | ||||||||||| || || | || ||||| || Sbjct 241118 CCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTT 241059 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || || ||||| |||| | || |||| | ||| ||||| | ||| || | || Sbjct 241058 GAATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTT 240999 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || |||||||||||||||||||| Sbjct 240998 TGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968 >seq2302 Length=121279 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | ||||| ||||||||||| ||||||||| | | | || || Sbjct 54116 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 54175 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || ||||| | || | ||| ||||| || || || | ||| ||||| Sbjct 54176 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 54235 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| ||| | |||| | | || | | ||| || || | || || Sbjct 54236 TCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATG 54295 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || ||||||||||||||| Sbjct 54296 GTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCATA 54331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | ||||| ||||||||||| ||||||||| | | | || || Sbjct 53432 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53491 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || ||||| | || | ||| ||||| || || || | ||| || || Sbjct 53492 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTG 53551 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | |||| | || || | | ||| ||||| | || || Sbjct 53552 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 53611 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || || |||||||||||| Sbjct 53612 GTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53647 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/240 (68%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 27013 AATTATTGC-CTCCGC---GCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATA 27068 |||||||| |||||| | | ||||| ||||| || | ||||| ||||||||||| Sbjct 52496 AATTATTGTGCTCCGCCACGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATG 52555 Query 27069 TTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGT 27128 || |||||| | | | || | ||||| || || || ||||| | || ||||| || Sbjct 52556 TTATAGTCGGAAAGGGTACGTCCATCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGC 52615 Query 27129 TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCT 27188 || || || || | ||| || || || ||||||| |||| |||| | | || Sbjct 52616 TGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGAATCA 52675 Query 27189 GTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | | ||| ||||| | || || | || || || || || || || |||||||||||| Sbjct 52676 GAAGATTCTACTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 52735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | ||||| ||||||||||| ||||||||| | | | || || Sbjct 53660 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53719 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || ||||| | || | ||| || || || || || | ||| || || Sbjct 53720 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTG 53779 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | |||| | || || | | ||| ||||| | || || Sbjct 53780 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 53839 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || || |||||||||||| Sbjct 53840 GTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | ||||| ||||||||||| ||||||||| | | | || || Sbjct 53888 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53947 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || || || | || | ||| |||||||| || || | ||| || || Sbjct 53948 TCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTG 54007 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | |||| | || || | | ||| ||||| | || || Sbjct 54008 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 54067 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || || ||||| |||||| Sbjct 54068 GTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCATA 54103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424810495104600