Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1768 86.0 3e-12 seq7 86.0 3e-12 >seq1768 Length=37857 Score = 86.0 bits (94), Expect = 3e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || ||||||||||| | || ||| ||||| |||||||| |||| | |||| ||| Sbjct 30894 GTACCAAACTGACCTATGGGTTGTAACAAATTTATATTGTTACTTCCAACATAATTTTGA 30953 Query 65150 GCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGTTCA 65209 || | | ||||| || | ||| | |||| |||||||||||| | ||||| ||| Sbjct 30954 GCTAAGTTAACAATTGTTGACATCAAAGACACTTCGCCGTGATGATATGCAGAATGCTCA 31013 Query 65210 GAGACATATCCACTAAATTGAGCAACTTTTATTTC-CGTTGTTAAATTCTTTTTAA 65264 | ||| | ||| | |||||||||||| ||||| |||| | |||| |||||| Sbjct 31014 GCTACAGAACCAGCTAGTTGAGCAACTTTAATTTCACGTT-TATCATTCCTTTTAA 31068 >seq7 Length=2848108 Score = 86.0 bits (94), Expect = 3e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || ||||||||||| | || ||| ||||| |||||||| |||| | |||| ||| Sbjct 2417620 GTACCAAACTGACCTATGGGTTGTAACAAATTTATATTGTTACTTCCAACATAATTTTGA 2417679 Query 65150 GCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGTTCA 65209 || | | ||||| || | ||| | |||| |||||||||||| | ||||| ||| Sbjct 2417680 GCTAAGTTAACAATTGTTGACATCAAAGACACTTCGCCGTGATGATATGCAGAATGCTCA 2417739 Query 65210 GAGACATATCCACTAAATTGAGCAACTTTTATTTC-CGTTGTTAAATTCTTTTTAA 65264 | ||| | ||| | |||||||||||| ||||| |||| | |||| |||||| Sbjct 2417740 GCTACAGAACCAGCTAGTTGAGCAACTTTAATTTCACGTT-TATCATTCCTTTTAA 2417794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235611279026250