Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 168 8e-37
seq276 165 9e-36
seq4 86.0 7e-12
>seq2302
Length=121279
Score = 168 bits (186), Expect = 8e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || || ||||| ||||| | || || || || |
Sbjct 52734 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATTACATTGGAAGTAGAATCTTCT 52675
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| |||| |||| ||||||| || || || |||||||| || || || |||||||||
Sbjct 52674 GATTCAATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 52615
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || ||||| || |||||||| || |||| |||||||| | ||||||||
Sbjct 52614 CAACGTCTGATCTTTGCCGGAAAGCAACTTGAAGATGGACGTACCCTTTCCGACTATAAC 52555
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| ||||| ||||| || ||||| | || |||||||| || || |||
Sbjct 52554 ATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCGTCTCCGTGGCGGA 52507
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || || ||||| ||||| | ||||| || ||| |
Sbjct 53190 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 53131
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| ||||| |||| | ||||| || || || |||||||| || || || |||||||||
Sbjct 53130 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53071
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || |||||||| |||||||| || || | |||||||| | ||||| ||
Sbjct 53070 CAACGTTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53011
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || ||||| | || ||||| || || |||||
Sbjct 53010 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCGACTCCGAGGTGG 52964
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || || ||||| ||||| | ||||| || ||| |
Sbjct 52962 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 52903
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| ||||| |||| | |||||||| || || |||||||| || || || ||||||||
Sbjct 52902 GATTCCATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAA 52843
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || ||||| || |||||||| || || | || || || | ||||||||
Sbjct 52842 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCTGACTATAAC 52783
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || ||||| | || ||||| ||||| |||||
Sbjct 52782 ATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCGACTTCGAGGTGG 52736
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || || ||||| ||||| | ||||| || ||| |
Sbjct 53418 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 53359
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| ||||| |||| | ||||| || || || |||||||| || || || |||||||||
Sbjct 53358 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53299
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || ||||| || |||||||| || || | |||||||| | ||||| ||
Sbjct 53298 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53239
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || ||||| | || ||||| || || |||||
Sbjct 53238 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCGACTCCGAGGTGG 53192
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || || ||||| ||||| | || || || || |
Sbjct 53874 ATGCAAATCTTCGTTAAGACCCTCACAGGAAAGACCATTACATTGGAAGTGGAATCGTCT 53815
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| |||| |||| | |||||||| || || |||||||| || || || |||||||||
Sbjct 53814 GATTCTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53755
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || ||||| || |||||||| || || | |||||||| | ||||| ||
Sbjct 53754 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53695
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || ||||| | || ||||| || || |||||
Sbjct 53694 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCGACTCCGAGGTGG 53648
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| ||||| || || || ||||| ||||| | ||||| || ||| |
Sbjct 54330 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 54271
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| ||||| |||| | || || || || || ||||| || || || || ||||||||
Sbjct 54270 GATTCCATTGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 54211
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || ||||| || |||||||| || || | |||||||| | ||||| ||
Sbjct 54210 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 54151
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || ||||| | || ||||| || || |||||
Sbjct 54150 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCGACTCCGAGGTGG 54104
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || || ||||| ||||| | || || || || |
Sbjct 53646 ATGCAAATCTTCGTTAAGACCCTCACAGGAAAGACCATTACATTGGAAGTGGAATCGTCT 53587
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| |||| |||| | |||||||| || || |||||||| || || || ||||||||
Sbjct 53586 GATTCTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAA 53527
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || ||||| || |||||||| || || | |||||||| | ||||| ||
Sbjct 53526 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53467
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || ||||| | || ||||| || || |||||
Sbjct 53466 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCGACTCCGAGGTGG 53420
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||||||||| || | || || || ||||| ||| | || |||||||||
Sbjct 54558 ATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATCA 54499
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| ||||| |||| | || ||||| || || ||||| || || ||||| || |||||
Sbjct 54498 GATTCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCACCTGACCAA 54439
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || ||||| || |||||||| || || | || || || | ||||| ||
Sbjct 54438 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCTGACTACAAC 54379
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || ||||| || ||||| |||| |||||||| || |||||
Sbjct 54378 ATCCAGAAAGAATCTACCCTTCACTTAGTGTTGCGTCTCCGTGGTGG 54332
>seq276
Length=376631
Score = 165 bits (182), Expect = 9e-36
Identities = 174/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| || || ||||| ||||| || || ||| | || || || ||
Sbjct 240739 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 240798
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| |||| |||| |||| ||||||||||| ||||| || ||||| || ||||| ||
Sbjct 240799 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 240858
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||| |||||||||| || |||||| | || |||| ||||| || | ||||||||
Sbjct 240859 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAA 240918
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| | || || ||||| || ||||| |||| | |||||||| ||||||
Sbjct 240919 TATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGGA 240967
Score = 165 bits (182), Expect = 9e-36
Identities = 174/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| || || ||||| ||||| || || ||| | || || || ||
Sbjct 240967 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241026
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| |||| |||| |||| || |||||||| ||||| || ||||| || ||||| ||
Sbjct 241027 AGATTCTATTGAAAATGTGAAAGCGAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 241086
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||| |||||||||| || |||||| | || |||| ||||| || | ||||||||
Sbjct 241087 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCTGACTATAA 241146
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| | || || ||||| || ||||| |||| | |||||||| ||||||
Sbjct 241147 TATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGGA 241195
Score = 163 bits (180), Expect = 3e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| || || ||||| || || || || ||| | || || || |||
Sbjct 240512 ATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTTGGAAGTAGAATCATCA 240571
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| |||| |||| |||| ||||||||||| ||||| || ||||| || ||||| ||
Sbjct 240572 GACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 240631
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| |||||||||| || |||||| | || |||| ||||| || | |||||||||
Sbjct 240632 CAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAAT 240691
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| || || ||||| || ||||| |||| | |||||||| ||||||
Sbjct 240692 ATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGGA 240739
Score = 161 bits (178), Expect = 1e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| || || ||||| ||||| || || ||| | || || || ||
Sbjct 241195 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241254
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| |||| |||| |||| ||||||||||| ||||| || || || || ||||| ||
Sbjct 241255 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241314
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||| |||||||||| || |||||| | || |||| ||||| || | ||||||||
Sbjct 241315 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAA 241374
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| | || || ||||| || ||||| |||| | |||||||| ||||||
Sbjct 241375 TATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGGA 241423
Score = 161 bits (178), Expect = 1e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| || || ||||| ||||| || || ||| | || || || ||
Sbjct 241423 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 241482
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| |||| |||| |||| ||||||||||| ||||| || || || || ||||| ||
Sbjct 241483 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241542
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||| |||||||||| || |||||| | || |||| ||||| || | ||||||||
Sbjct 241543 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATAA 241602
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| | || || ||||| || ||||| |||| | |||||||| ||||||
Sbjct 241603 TATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGGA 241651
>seq4
Length=2478080
Score = 86.0 bits (94), Expect = 7e-12
Identities = 146/207 (71%), Gaps = 5/207 (2%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|| || ||||||||||| || | || || || ||||| | | | || |||||||||
Sbjct 1881670 ATACAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCATTTTGGAAGTTGAGTCATCA 1881729
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTC-AGGACAAGGAGGGAATTC--CTCCAGAC 27522
||| ||||| ||| | || || || || | || ||||| ||| | | | ||||||
Sbjct 1881730 GATTCCATTGAAAAAGTAAAAGCCAAGATCCAAGAACAAGAAGGCATCGCCGCACCAGAC 1881789
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA-TGATCGTACCCTAGCAGACTA 27581
|| || ||| | | |||||||| || ||||| || | ||| |||| | | |||||
Sbjct 1881790 CAACAACGTTTGACCTTTGCTGGAAATCAACTAGAACACAGAT-GTACTCGTTCTGACTA 1881848
Query 27582 TAATGTCCAAAAGGAATCCACTCTTCA 27608
|| ||||||| ||||| ||||||||
Sbjct 1881849 CAACATCCAAAAAGAATCTACTCTTCA 1881875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570139841546000
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