Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 141 6e-29
seq276 102 5e-17
seq231 96.9 2e-15
seq86 89.7 3e-13
seq93 82.4 5e-11
>seq2302
Length=121279
Score = 141 bits (156), Expect = 6e-29
Identities = 165/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||||||| || || || || || || || ||||| || || |||||||| ||
Sbjct 54341 AGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGT 54400
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||||||||| || |||||||| || ||||| |||||||| || || | || ||
Sbjct 54401 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCT 54460
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668
|||||| |||||| ||||| | ||| | ||| ||| ||||||| ||
Sbjct 54461 TTGTCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTG 54520
Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711
|| |||||||| || || ||||| ||||| |||||||||||||
Sbjct 54521 ATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTTGA 54563
Score = 127 bits (140), Expect = 1e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||| ||||||||||| || || || || |||||||||||||| || |||
Sbjct 52736 CCACCTCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAA 52795
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| || ||||||||||||| || |||||||| || ||||| |||||||| || ||
Sbjct 52796 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 52855
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| || ||||||||| ||||||
Sbjct 52856 ATACCTTCCTTGTCTTGGATCTT 52878
Score = 114 bits (126), Expect = 8e-21
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| || ||||||||||| || || || || ||||||||||| || || |||
Sbjct 53420 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53479
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||||||||| || |||||||| || ||||| |||||||| || ||
Sbjct 53480 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 53539
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| || ||||||||| ||||||
Sbjct 53540 ATACCTTCCTTGTCTTGGATCTT 53562
Score = 111 bits (122), Expect = 1e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| || ||||||||||| || || || || ||||||||||| || || |||
Sbjct 54104 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 54163
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||||||||| || |||||||| || ||||| |||||||| || ||
Sbjct 54164 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 54223
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA 34630
| || || |||||| |||||| |||||
Sbjct 54224 ATACCTTCTTTGTCTTGGATCTTGGCTTTTA 54254
Score = 109 bits (120), Expect = 3e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||||||||||| || || || || |||||||||||||| || |||
Sbjct 52508 CCGCCACGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAA 52567
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||||||||| || |||||||| || | ||| || ||||| || ||
Sbjct 52568 AGGGTACGTCCATCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGG 52627
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| || ||||||||| ||||||
Sbjct 52628 ATACCTTCCTTGTCTTGGATCTT 52650
Score = 109 bits (120), Expect = 3e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| || ||||||||||| || || || || ||||||||||| || || |||
Sbjct 53192 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53251
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||||||||| || |||||||| || ||||| || ||||| || ||
Sbjct 53252 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53311
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| || ||||||||| ||||||
Sbjct 53312 ATACCTTCCTTGTCTTGGATCTT 53334
Score = 109 bits (120), Expect = 3e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| || ||||||||||| || || || || ||||||||||| || || |||
Sbjct 53648 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53707
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||||||||| || |||||||| || ||||| || ||||| || ||
Sbjct 53708 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53767
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| || ||||||||| ||||||
Sbjct 53768 ATACCTTCCTTGTCTTGGATCTT 53790
Score = 105 bits (116), Expect = 4e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| || ||||||||||| || || || || ||||||||||| || || |||
Sbjct 52964 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53023
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||||||||| || || ||||| || ||||| || ||||| || ||
Sbjct 53024 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53083
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| || ||||||||| ||||||
Sbjct 53084 ATACCTTCCTTGTCTTGGATCTT 53106
Score = 105 bits (116), Expect = 4e-18
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| || ||||||||||| || || || || ||||||||||| || || |||
Sbjct 53876 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53935
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || ||||||||||||| || || ||||| || ||||| ||||| || || ||
Sbjct 53936 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 53995
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657
| || ||||||||| |||| || | ||||| | ||| | || || | ||||
Sbjct 53996 ATACCTTCCTTGTCTTGGATC-TTAGCCTTAACATTTTCAATAGAATCAGACGAT-TCCA 54053
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||| || || || || || || | || || || || ||||||||
Sbjct 54054 CTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102
>seq276
Length=376631
Score = 102 bits (112), Expect = 5e-17
Identities = 164/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||| | || || || || || || || ||||| ||||| || ||
Sbjct 240738 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 240679
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| | ||| || |||||||| ||||| |||||||| || || ||
Sbjct 240678 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 240619
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| ||| || |||||| ||| ||| | ||| || | ||| | |||| || ||
Sbjct 240618 ATTCCTTCTTTGTCT-TGAATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTAC 240560
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711
||||| ||||| ||||| || || | ||||||||||| || ||||| ||||
Sbjct 240559 TTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATCTTGA 240507
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||| | || || || || || || || ||||| ||||| || ||
Sbjct 240966 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 240907
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| | ||| || |||||||| ||||| |||||||| || || ||
Sbjct 240906 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 240847
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTT-CGCTCTCCA 34657
| ||| || |||||| ||| ||| | ||| || | ||| | |||| || | || |
Sbjct 240846 ATTCCTTCTTTGTCT-TGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGAT-TCTA 240789
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||| || || ||||| || || | ||||||||||| || |||||
Sbjct 240788 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||| | || || || || || || || ||||| ||||| || ||
Sbjct 241194 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGAT 241135
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| | ||| || |||||||| ||||| |||||||| || || ||
Sbjct 241134 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241075
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTT-CGCTCTCCA 34657
| ||| || |||||| ||| ||| | ||| || | ||| | ||| || | || |
Sbjct 241074 ATTCCTTCTTTGTCT-TGAATTTTCGCTTTCACATTTTCAATAGAATCTGACGAT-TCTA 241017
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||| || || ||||| || || | ||||||||||| || |||||
Sbjct 241016 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||| | || || || || || || || ||||| ||||| || ||
Sbjct 241422 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 241363
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| | ||| || |||||||| ||||| |||||||| || || ||
Sbjct 241362 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241303
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTT-CGCTCTCCA 34657
| || || |||||| ||| ||| | ||| || | ||| | |||| || | || |
Sbjct 241302 ATCCCTTCTTTGTCT-TGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGAT-TCTA 241245
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||| || || ||||| || || | ||||||||||| || |||||
Sbjct 241244 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||| | || || || || || || || ||||| ||||| || ||
Sbjct 241650 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 241591
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| | ||| || |||||||| ||||| |||||||| || || ||
Sbjct 241590 AAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241531
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || || |||||| ||| ||| | ||| || | ||| | |||| || ||
Sbjct 241530 ATCCCTTCTTTGTCT-TGAATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTAC 241472
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || || ||||| || || | ||||||||||| || |||||
Sbjct 241471 TTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424
>seq231
Length=580210
Score = 96.9 bits (106), Expect = 2e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
||||||| ||||||||||| || | ||| || | |||||||| || || ||||| || |
Sbjct 340829 CCTTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 340888
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GAT 34635
| ||||| ||||| || || || | || || || ||| ||| ||| | ||| || |
Sbjct 340889 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGAT-TTTGGCTTTGACATTT 340947
Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695
|| |||||| ||| || || | ||| || || || || || | ||||||||
Sbjct 340948 TCGATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACG 341007
Query 34696 AAAATCTGCATGTTGAT 34712
||||| |||||||||||
Sbjct 341008 AAAATTTGCATGTTGAT 341024
>seq86
Length=815150
Score = 89.7 bits (98), Expect = 3e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| || | | ||||| ||||| || || ||||||||||| ||||||||
Sbjct 596441 CCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 596500
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
| || || | |||||||||||||| ||||||||||| ||||| || || ||||| ||
Sbjct 596501 AAAGTACGGCCATCTTCAAGTTGTTTGCCGGCAAATATCAAACGTTGCTGATCCGGAGG 596559
>seq93
Length=972031
Score = 82.4 bits (90), Expect = 5e-11
Identities = 152/223 (68%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| ||||| | || | ||| || |||| ||||||||| || ||||| || |
Sbjct 23061 AGACGGAACACGACGTGAATAGTAGAATCTTTTTCAATGTTATATTCGGAAAGAGTATGT 23120
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||| |||||| ||| ||| ||| || | ||| || ||||| | || || |||
Sbjct 23121 CCGTCTATAAGTTGCTTATCGGAAAAGATCAGACGTTGATGGTCTGTTGGGTAACCTTCC 23180
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668
| ||| |||||| ||||| | ||| | | | ||| ||||||| ||
Sbjct 23181 CTTTCTTGGATCTTGACTTTTACTTTTTCAATGGGATATGATGACTCAACTTCCAAAGTG 23240
Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711
|| |||||||| || || ||||| | || |||||||||||||
Sbjct 23241 ATAGTTTTACCAGTCAAAGTTTTGATGAAGATCTGCATGTTGA 23283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314637829274525
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |