Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq3026 349 1e-91 >seq3026 Length=4301 Score = 349 bits (386), Expect = 1e-91 Identities = 451/623 (72%), Gaps = 0/623 (0%) Strand=Plus/Minus Query 65295 AGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCAGGAAACATCCATACCA 65354 ||||||||| | ||||||||| || || ||||| ||||| ||| |||||||| |||| Sbjct 735 AGGTCATCATCACAATCACCACGATTTTGGCCGCGCCCGCGTAAGGGAACATCCAGACCA 676 Query 65355 TAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTCGCTGGGGGTGTTCT 65414 | |||||||| | ||| | ||||| | || ||||||||||| |||||||||| ||| | Sbjct 675 TGGTGGCGATAATCCATCGTGAAATCACGGCATTGGCAAACATTTCGCTGGGGGAGTTGT 616 Query 65415 TCATCACATCCATGCCGATTTTGACAAATGCATCGCGAGTTTCTTCATTGAAGATTGGCA 65474 |||||| | || || | || || | ||||||| | || | || || |||| Sbjct 615 CCATCACCTTTTCGCTAATCACGGTGAAGGCCTGGCGAGTTGCCTCGTCAAAAATCGGCA 556 Query 65475 TATATTCAAATGCCCACGCCGCAATACCTGTCCCGAGAATATTACCCAGCAGCACGACGC 65534 ||| | ||| ||| | || | | | || |||| | ||| || |||||| | | Sbjct 555 TATGATTAAACGCCAATGCGCCGAGCGCCGTACCGATCAAATTTCCTGCCAGCACTATGA 496 Query 65535 CCCATAACCGCATAAGTAAGCCAACGTTGCTCATTGTCGGTTTTTGCATGACGGGTAGTA 65594 |||| | || | | | || || | || ||||| ||||| || |||| || Sbjct 495 CCCACAGACGAAACAACAGCATAAAATTACCGCCAGTGGGTTTGTGCATCACCGGTAATA 436 Query 65595 CCGCAGTCACGGTGTTTTCGGTAAATAATTGCTGGCGGGCCATAATGACGATAATAAAAC 65654 ||||||| || ||||| || || || | ||||||||| |||||||||||||| | ||| | Sbjct 435 CCGCAGTAACTGTGTTCTCAGTGAACAGTTGCTGGCGCGCCATAATGACGATGACAAAGC 376 Query 65655 CAAAGGTATAACCGAGATTCTCCAGCAAGAAGCTGCCCGGCACACCTTCCAGTTCGACAT 65714 | ||||||||||| ||||||||||||| ||| | ||| |||||| | ||| | |||| Sbjct 375 CGAAGGTATAACCCAGATTCTCCAGCAGGAAACCGCCTGGCACATCGGCCAAATGCACAT 316 Query 65715 GAAATATCCCTTTTGCCAGTAATGAAGCGCCCATCGACAGACCCGCCGCAATGGCTGACC 65774 | || |||||||| |||| | ||||||| ||| || || ||||| || | ||| |||| Sbjct 315 GGAAAATCCCTTTGGCCATCAGCGAAGCGCTCATGGAGAGCCCCGCAGCCACGGCAGACC 256 Query 65775 ACAGTAGTGCCATTGCGTCGCGTTCCAGCTCTTTTTCACCATCCTGGCGGATATGCTCAT 65834 | | || ||||| ||||||| || |||||||| || |||||||||||||| | |||| Sbjct 255 ATAATAAGGCCATGCCGTCGCGCTCTAGCTCTTTCTCGCCATCCTGGCGGATCTCTTCAT 196 Query 65835 GAATTGCCATCGCCCGGGAGGGGAGTCGATCTTCATCTATTTCTAtttttttGCCACGCT 65894 |||| || ||||| ||||| || ||||||||| | |||||| | ||| || | | Sbjct 195 GAATGGCAGCAGCCCGTGAGGGCAGGGCATCTTCATCCACTTCTATCTCTTTCCCCTGGT 136 Query 65895 CTTTTTCTTCGCTCTCAACTTCA 65917 | ||||| |||||||| || ||| Sbjct 135 CCTTTTCGTCGCTCTCGACATCA 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210869695428300