Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_028693.1 Length=18607 Score E Sequences producing significant alignments: (Bits) Value seq2572 123 3e-24 >seq2572 Length=8270 Score = 123 bits (136), Expect = 3e-24 Identities = 308/455 (68%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 16867 ACACCACCCAAGTCAGGGAATGC-AATAATACGGTCTGAGAAGTCAATACCGTTTATATG 16925 ||||| || ||||| | || || ||| | | |||||| |||||||| || | || Sbjct 463 ACACCGCCTAAGTC-GTCAAAGCTAATTACATGGTCTGTAAAGTCAATGCCTGATGCTTG 405 Query 16926 GTATGTGTTAGCGAGTTTGCTGTCAAGTAAACGAGCTTTAATTTTTGTTGTCGTTAAAAT 16985 | |||||||||| | ||| | || | ||| | |||||| | ||| |||||||| Sbjct 404 GAATGTGTTAGCAATTTTTGTATCTAATAAGAATGATTTAATACTATCTGTTGTTAAAAT 345 Query 16986 CATTAATTT-AGACATATCTGAAACTGTTGTGTAACGACCAATAGCACCACCTGAAGCTT 17044 | ||| | ||||| | ||||||||||||||||||||||| | ||||||||||| Sbjct 344 -AGCAATATCAGACAATTTAGAAACTGTTGTGTAACGACCAATTGACCCACCTGAAGCAG 286 Query 17045 TAGGTGCTTCGTTGTATTTGTCTTGGTTTGTTTGTAAGTTCATCATTTGTTCAGCGATTT 17104 || ||||| ||||||||||| ||| |||| | ||| | | |||| | || Sbjct 285 TATTAGCTTCATTGTATTTGTCACTGTTATTTTGCATGTTTAGTACAGCTTCAAATACTT 226 Query 17105 GTTCAAAC-ATACCTTCCAAGTTATCTA-CTT--CGATTTTTTGAGAGTCAGATAGTTGG 17160 | | | | | ||| | || || || | | ||| | ||| |||||||||| |||| Sbjct 225 -TACTTGCTAAATCTT-CTTGTGATGTAGCGTAACGAATATTT--GAGTCAGATAATTGG 170 Query 17161 TTCTCTGCGTAGTCTACTAACATACCTTTGATTTGACGTTCTTCGTCGACGTTAATATCA 17220 || ||| ||||| || | ||| | ||||| |||||| || |||||||||||| Sbjct 169 TTAATTGCATAGTCAACAACCATGGCACGGATTTCTTTTTCTTCTTCTACGTTAATATCA 110 Query 17221 GAGATTTTCTTTTTGTAAACAGCAATAGCATATTTAACACCATCTTTTAATGTTAACCAG 17280 || || || || || | || || | ||||| || | | || ||| | || Sbjct 109 GAAATCTTTTTCTTCAATACTGCTAGGGCATAGTTTGTAGCGTCACCTAAGTCTTTGAAG 50 Query 17281 TTTTGGCGAACATCGTTATTATTTAATGTAAATTT 17315 || || ||||||||||||||||||||||||| Sbjct 49 TTAAAACGTGCATCGTTATTATTTAATGTAAATTT 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59407561371750