Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq4111 1112 0.0 >seq4111 Length=4130 Score = 1112 bits (1232), Expect = 0.0 Identities = 744/824 (90%), Gaps = 4/824 (0%) Strand=Plus/Plus Query 17505 GGAAACCTACAATCTGGCGATCCGCAA-GCGCATCCTCGAAACGCGGGGC-GTGAAAT-C 17561 ||||||||||| ||||||||| || ||| |||||||||||||||||| || |||| | Sbjct 3305 GGAAACCTACATCTTGGCGATCCATAAAGCGTATCCTCGAAACGCGGGGCCGTTAAATTC 3364 Query 17562 CATCCTCTCTTT-CAATACCACAGTGAACACGACGACGCGCCGCGTCCAGTTCTTCGCTG 17620 ||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 3365 CATTCTCTCTTTGCAATACGACAGTGAATACGACGACGCGCCGCGTCCAGTTCTTCGCTG 3424 Query 17621 AAATCGACACTATCTACGGAACAACGACAGTAACCAGCGAGGCATAAATGGCCCTCAATT 17680 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 3425 AAATCGACACTATATACGGAACAACGACAGTTACCAGCGAGGCATAAATGGCCCTCAATT 3484 Query 17681 TGGACACACTCGGCTTATCGGCAACGGTAACCGCTGAGGGGATCAGTGCGCCTGATTACC 17740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3485 TGGACACACTCGGCTTATCGGCAACGGTAACCGCTGAGGGGATCAGTGCGCCTGATTACC 3544 Query 17741 AGACGATACTCGATACCCTGACGAGCTATTTCCAGCAGATTTATGGTAGTGACGCTTATC 17800 |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 3545 AGACGATACTTGATACCCTGACGAGCTATTTCCAGCAGATTTATGGCAGCGACGCTTATC 3604 Query 17801 TGGAGCCGGACAGCAAAGACGGCCAGATGGTGGCGCTGGTGGCGCTTGCTATTCACGATG 17860 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 3605 TGGAACCGGACAGCAAAGACGGCCAGATGGTGGCGCTGGTGGCGCTGGCTATTCACGATG 3664 Query 17861 CCAATAACACAGCCATTTCCGTCTATAACTGCTTCTCACCTGCTACGGGTTACGGCGCAG 17920 |||||||||| |||||| |||| || |||||||||||||||||||||| ||||||||||| Sbjct 3665 CCAATAACACGGCCATTACCGTTTACAACTGCTTCTCACCTGCTACGGCTTACGGCGCAG 3724 Query 17921 CGCTGACCAGTAACGTAAAAATTAACGGTATCGCGCGCAAAGGTGCAACGAACTCTACCG 17980 |||| ||||||||||| |||||||||||||||||||||||||| || |||||||| |||| Sbjct 3725 CGCTAACCAGTAACGTGAAAATTAACGGTATCGCGCGCAAAGGGGCGACGAACTCCACCG 3784 Query 17981 TGGATTTACTGCTCACTGGCACCGCAGGAACAACCATTACGAACGGCACCGTGAAAGACA 18040 ||||| | |||||||| ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 3785 TGGATCTGCTGCTCACCGGCACCGCAGGGACAACCATTACGAACGGTACCGTGAAAGACA 3844 Query 18041 CTAATAATGTGATCTGGCGTCTTCCGGCTTCAGTGGTGATTGGTGTTGATGGCACCGTGA 18100 | ||||| ||||||||||| ||||| || || || |||||||||||||| || || |||| Sbjct 3845 CCAATAACGTGATCTGGCGCCTTCCTGCCTCGGTAGTGATTGGTGTTGACGGTACGGTGA 3904 Query 18101 CGGTAACTGCTATCTGTTCAAACAGCGGAGCGGTTGCGGCGCTGGCCGGGACGATCACCA 18160 ||| |||||| | ||| ||||||||||| ||||| || |||||||| ||||| || || | Sbjct 3905 CGGCAACTGCCACCTGCTCAAACAGCGGCGCGGTCGCAGCGCTGGCGGGGACAATTACTA 3964 Query 18161 CCATCAATACACCGACCCGTGGCTGGACGTCAGTAACCAACCCGGCAGCGGCCGCCGTTG 18220 ||||||| || |||||||| |||||||| || ||||||||||||||||||||| |||| | Sbjct 3965 CCATCAACACGCCGACCCGAGGCTGGACATCGGTAACCAACCCGGCAGCGGCCACCGTAG 4024 Query 18221 GCGCACCTGCAGAAACGGACGCAGAACTGCGCATCAGGCAGGGGCAGAGTGTCGCGATAC 18280 |||| || |||||||| |||||||| ||||||||||||||||||||||| || ||| | | Sbjct 4025 GCGCTCCGGCAGAAACCGACGCAGAGCTGCGCATCAGGCAGGGGCAGAGCGTTGCGCTGC 4084 Query 18281 CATCCATCACACCATTTGAAGGTGTGGACGGGGCGATCGCTAAT 18324 | || |||||||| |||||||| || || || ||||| |||||| Sbjct 4085 CCTCTATCACACCGTTTGAAGGCGTCGATGGTGCGATTGCTAAT 4128 Score = 955 bits (1058), Expect = 0.0 Identities = 716/835 (86%), Gaps = 18/835 (2%) Strand=Plus/Plus Query 13443 ATTTACGGTGGTGGTGATCCGCACTCCGTGGGGAATCAG--GTAGAACGTCGGCAGCAGT 13500 |||||||||||||||||||||| || | | || |||| || ||||| || ||||||| Sbjct 1 ATTTACGGTGGTGGTGATCCGC-GTCAG-GTGGGTTCAGAAGTTGAACGCCGCCAGCAGT 58 Query 13501 CTGCAAATGCCCAGCTCATGCGCGGCAATCAAACGAAGGTGGGTTAATGGATATTCTCTC 13560 | ||||| || ||| ||||||| |||||||||||||||||||| |||||||| ||||||| Sbjct 59 CGGCAAACGCTCAGGTCATGCGTGGCAATCAAACGAAGGTGGGCTAATGGATTTTCTCTC 118 Query 13561 TACTCTCTTTCATCAGCAGTCCAGGAGAATTGGGGTGCTTATCCCCAGTGTGGTTGTTTC 13620 ||||||||||| |||||| || | | ||| ||| || | ||||||| ||||| || || Sbjct 119 AACTCTCTTTCAACAGCAGACCCGAAAAATCGGGATGATCGTCCCCAGCGTGGTGGTATC 178 Query 13621 AGAGAAGCACACCGACACGCTAGAGATAACAGAGCACCCTGTCGAGGTCGGTGCCGCCAT 13680 |||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 179 TGAGAAGCATACCGACACGCTGGAGATAACAGAGCACCCTGTCGAGGTCGGGGCAGCCAT 238 Query 13681 CGCTGACCATGCCTACAAAAAACCGTCTGAAGTGGTGATGGAGGTCGGTTTCGCTGGTGG 13740 || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 239 TGCGGACCATGCCTACAAAAAGCCGTCCGAAGTGGTGATGGAGGTCGGTTTCGCTGGTGG 298 Query 13741 CGGATCGTTGCTGGATTTTGCCAGTAACCTGACGGCCACCAGCTTACTGGGCCTGAGTCC 13800 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 299 CGGAGCGTTGCTGGATTTTGCCAGTAATCTGACGGCCACCAGCTTACTGGGCCTGAGTCC 358 Query 13801 TCAGCAGACGTATCAGGAGATACTCGACTTGCAGGAAAGCCGTATTCCCTTCGATGTGGT 13860 |||||||||||||||||||| || ||| | |||| ||||||||||| ||||||||||| Sbjct 359 CCAGCAGACGTATCAGGAGATTCTTGACCTACAGGCGAGCCGTATTCCTTTCGATGTGGT 418 Query 13861 GACCGGCAAACGGCTGTACAGCAACATGCTGATCCGCGCACTGGAGGTGACGACCGACAG 13920 |||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 419 GACCGGTAAGCGGCTGTATAGCAACATGCTGATCCGCGCGCTGGAAGTGACGACCGACAA 478 Query 13921 GACGACCGAAAATGTCTTGTCCGCCGTCCTCACCCTGAGGGAGGTTCTCATCTCGCAGAC 13980 |||||||||||| || || || |||||||||||||||||||||||||| ||||||||||| Sbjct 479 GACGACCGAAAACGTATTATCTGCCGTCCTCACCCTGAGGGAGGTTCTTATCTCGCAGAC 538 Query 13981 GCAGCAGGTAACCGTCGCGGATAAAACCGACATGAAGGACGGGGCCAGCACGTCGCCAGT 14040 ||||||| | ||||| |||||||||||| |||||||||||||||||||||||||| | || Sbjct 539 GCAGCAGATCACCGTTGCGGATAAAACCAACATGAAGGACGGGGCCAGCACGTCGGCGGT 598 Query 14041 CCTCAATACCGGAACCAAAACAACTAAACCGCCCAACACTTCTTTATTGCAGAG------ 14094 ||||||||||| |||||||| || || ||||| || || || | || | || Sbjct 599 GCTCAATACCGGCACCAAAACCACAAAGCCGCCAAATACCTCGCTGCTGAAAAGCATCAC 658 Query 14095 TGGT------GCGGCTTTTCTGGGGCTGGGTTAATGACTATTCAGGAAATTCCGCTGACC 14148 ||| ||| | || |||||||| || ||||| | ||||| ||||| |||||||| Sbjct 659 GGGTAACGCGGCGTCATTACTGGGGCTCGGCTAATGTCAATTCATGAAATCCCGCTGACA 718 Query 14149 GCGGATAACCAGCAGTTCAGCATCATCCTGGCGGGTATCACGTGGCGGATTCGCATCATC 14208 |||||||||||||| |||||||||||||||||||| | ||| || |||||| |||||| | Sbjct 719 GCGGATAACCAGCAATTCAGCATCATCCTGGCGGGGACCACCTGACGGATTAGCATCACC 778 Query 14209 TGGCGTGACCTGTACTGGATCATGGACCTGCAGAACGACAG-GGGGGAGCCGGTA 14262 || || || ||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 779 TGACGCGATCTGTACTGGATTATGGACCTGCA-AACGACAGAGGGGGAGCCGGTA 832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130209395776700