Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_028853.1
Length=50078
Score E
Sequences producing significant alignments: (Bits) Value
seq1617 116 1e-21
>seq1617
Length=11810
Score = 116 bits (128), Expect = 1e-21
Identities = 347/524 (66%), Gaps = 15/524 (3%)
Strand=Plus/Minus
Query 4025 AAATATCAGCACAGAATCTATTGACGGAGATCAACACCTGATTATCCGCGGCGTTGTGCC 4084
||| |||| ||| ||| | || ||||| | | ||| | | | |||||| || |||
Sbjct 11475 AAACATCACCACTGAAACCATCGACGGCAAGCCACATATCGTGGTTCGCGGCATTACGCC 11416
Query 4085 GATTGTTGATGATGTTGTGATGAACGACGGA--CTTTATCCTGCGGATGAAATCAATAAA 4142
|||| || ||| ||||||||||| |||| | || || || | ||||| ||
Sbjct 11415 CGTTGTGGACGATATTGTGATGAAC--CGGAAGTTGTACCCGGCAGCAGAAATTGGCAAG 11358
Query 4143 AGCTACAACAGCTTAGAGGGCAACTTTATGCCGCTTGGGCATCCAAAAATCGAAGGTAAA 4202
||| |||| | ||| | ||| |||||||| || || || ||| | || || ||
Sbjct 11357 GCCTATAACACGCTCGAGCGTAACCCGATGCCGCTGGGCCACCCTAAAGTGGATGGCAAG 11298
Query 4203 TACGTTTCAGCCCAAGATGTTCGAGCGGTGAACAAACATCACGTCGGTGCGTGGGCGAAG 4262
|||| || |||| |||||||| || || || || | ||||| ||||||||| | ||
Sbjct 11297 CACGTATCGGCCCGGGATGTTCGTGCAGTCAATAACTACCACGTAGGTGCGTGGCTGCAG 11238
Query 4263 AACGTACGCAAGGAAAGTGGCAAAGT-GCTGGTCGATATGTATATCAACCGCCGCTTTGC 4321
||||| | | |||||| || |||| ||| ||||| | ||||||| | |||
Sbjct 11237 AACGTGAGTCATACCGATGGCAAGGTAACTGG-CGACATGTACGTTGACCGCCGATATGC 11179
Query 4322 GGAAGGTTCA--GAACAGGGCAAAACCTTGCTTGAACGACTTGACGGAATGGTGACAAAC 4379
||| | || || ||||||| | || || | || || || | |||| | |
Sbjct 11178 CGAA--TCCAGCGAGAAGGGCAAGCGCCTGATTAATCGCCTAGATGAAATGTCAGCCGGC 11121
Query 4380 ACCAACGCTGAACCTATTCACGTTTCCACAGGGCTGAT-TCTAAACAAAGTCAAGCAATC 4438
|||||||| ||||| |||||| | || || || ||| | | | || | || | |
Sbjct 11120 ACCAACGCCGAACCCATTCACATCTCAACCGGCCTGCTGTATTCCGGAATTGCCGCTAAC 11061
Query 4439 GGGTAAATCCAAAGGCAAGAAATATAGCTGGATTGCGACAAATATGTCGTTCGATCATAT 4498
|| |||| || ||||| || || | | || || || || ||| |||||| ||| |
Sbjct 11060 -GGCGAATCGAAGGGCAAAAAGTACAACGAAATCGCCACCAACATGATGTTCGACCATGT 11002
Query 4499 TGCAATATTGCTTGATGTGCCGGGCGC--GGCGACACCTGATGA 4540
||| | ||||||||| ||| || || ||| || ||||||||
Sbjct 11001 TGCGGTGCTGCTTGATGAGCCCGGTGCAAGGC-ACCCCTGATGA 10959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160082506134000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |