Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq1617 116 1e-21 >seq1617 Length=11810 Score = 116 bits (128), Expect = 1e-21 Identities = 347/524 (66%), Gaps = 15/524 (3%) Strand=Plus/Minus Query 4025 AAATATCAGCACAGAATCTATTGACGGAGATCAACACCTGATTATCCGCGGCGTTGTGCC 4084 ||| |||| ||| ||| | || ||||| | | ||| | | | |||||| || ||| Sbjct 11475 AAACATCACCACTGAAACCATCGACGGCAAGCCACATATCGTGGTTCGCGGCATTACGCC 11416 Query 4085 GATTGTTGATGATGTTGTGATGAACGACGGA--CTTTATCCTGCGGATGAAATCAATAAA 4142 |||| || ||| ||||||||||| |||| | || || || | ||||| || Sbjct 11415 CGTTGTGGACGATATTGTGATGAAC--CGGAAGTTGTACCCGGCAGCAGAAATTGGCAAG 11358 Query 4143 AGCTACAACAGCTTAGAGGGCAACTTTATGCCGCTTGGGCATCCAAAAATCGAAGGTAAA 4202 ||| |||| | ||| | ||| |||||||| || || || ||| | || || || Sbjct 11357 GCCTATAACACGCTCGAGCGTAACCCGATGCCGCTGGGCCACCCTAAAGTGGATGGCAAG 11298 Query 4203 TACGTTTCAGCCCAAGATGTTCGAGCGGTGAACAAACATCACGTCGGTGCGTGGGCGAAG 4262 |||| || |||| |||||||| || || || || | ||||| ||||||||| | || Sbjct 11297 CACGTATCGGCCCGGGATGTTCGTGCAGTCAATAACTACCACGTAGGTGCGTGGCTGCAG 11238 Query 4263 AACGTACGCAAGGAAAGTGGCAAAGT-GCTGGTCGATATGTATATCAACCGCCGCTTTGC 4321 ||||| | | |||||| || |||| ||| ||||| | ||||||| | ||| Sbjct 11237 AACGTGAGTCATACCGATGGCAAGGTAACTGG-CGACATGTACGTTGACCGCCGATATGC 11179 Query 4322 GGAAGGTTCA--GAACAGGGCAAAACCTTGCTTGAACGACTTGACGGAATGGTGACAAAC 4379 ||| | || || ||||||| | || || | || || || | |||| | | Sbjct 11178 CGAA--TCCAGCGAGAAGGGCAAGCGCCTGATTAATCGCCTAGATGAAATGTCAGCCGGC 11121 Query 4380 ACCAACGCTGAACCTATTCACGTTTCCACAGGGCTGAT-TCTAAACAAAGTCAAGCAATC 4438 |||||||| ||||| |||||| | || || || ||| | | | || | || | | Sbjct 11120 ACCAACGCCGAACCCATTCACATCTCAACCGGCCTGCTGTATTCCGGAATTGCCGCTAAC 11061 Query 4439 GGGTAAATCCAAAGGCAAGAAATATAGCTGGATTGCGACAAATATGTCGTTCGATCATAT 4498 || |||| || ||||| || || | | || || || || ||| |||||| ||| | Sbjct 11060 -GGCGAATCGAAGGGCAAAAAGTACAACGAAATCGCCACCAACATGATGTTCGACCATGT 11002 Query 4499 TGCAATATTGCTTGATGTGCCGGGCGC--GGCGACACCTGATGA 4540 ||| | ||||||||| ||| || || ||| || |||||||| Sbjct 11001 TGCGGTGCTGCTTGATGAGCCCGGTGCAAGGC-ACCCCTGATGA 10959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160082506134000