Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq2569 922 0.0 seq4194 109 4e-19 seq2330 87.8 1e-12 >seq2569 Length=43619 Score = 922 bits (1022), Expect = 0.0 Identities = 781/949 (82%), Gaps = 9/949 (1%) Strand=Plus/Minus Query 71578 TCACTATGTAATATACACCCCTCGGGTATATCGATTTGATTT-AATGTATCATTAACTAA 71636 |||||||||| ||| || ||| |||||||| ||||||||| ||||||||||| | ||| Sbjct 1347 TCACTATGTAGTATGCAATTCTCAGGTATATCTATTTGATTTCAATGTATCATTTAATAA 1288 Query 71637 A-CTTTGGTCTTGTTTATCATCTATTTTATACGCCACAATTTCTCCGTTATAAATATCC- 71694 | ||||| |||||||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct 1287 AGCTTTGATCTTGTTTGTTATCTATTTTATACGCCACAATTTCTCCGTTATAAACATCCC 1228 Query 71695 ATTATCGAAGATAAATACA-CATAGAATGACCAAATGGTAAATAAGTAATATCGGTTGTT 71753 || || ||||||||||||| |||||| | ||| || ||||||||||||||||| |||||| Sbjct 1227 ATAATTGAAGATAAATACAACATAGAGTTACCGAAAGGTAAATAAGTAATATCAGTTGTT 1168 Query 71754 AA-TACTTCCATGGGACAACTCGCTTTAAATTGTCTTTGTAATAAATTGTCAGTTT-ATA 71811 || ||||||||| || | |||||||| ||||||||||||||||| || |||| ||| Sbjct 1167 AAATACTTCCATTGGTTGGTTAGCTTTAAACTGTCTTTGTAATAAATTCTCTGTTTTATA 1108 Query 71812 ATACGGTTTACCTATCCTTGTCG-TCTTTTAGGTCTAACTCGGCAGT-CAAATGATGCTT 71869 ||| ||||| || || || | | | ||||||| ||||||||||||| || || || || Sbjct 1107 ATAAGGTTTGCCAATTTTTTTAGATTTTTTAGGCCTAACTCGGCAGTTCAGATTATACTC 1048 Query 71870 CTGCATAATTCTCTGTACTCTCTTATGATTAATTGGTGATGTATAACATTGATTAATCAG 71929 |||| |||| ||| ||||| ||||||||||||| || || ||| |||||||||||| Sbjct 1047 TCGCATGATTCGCTGAACTCTTTTATGATTAATTGATGCTGAATACAATTGATTAATCAA 988 Query 71930 TGCTGTAATCTTACGATAACCGTAGGTATAGTGGTTAGCTTCACATAATTCAATAACTTT 71989 |||||||| || |||||||||||||| | | || |||||||||||||||||| || Sbjct 987 CGCTGTAATTTTGCGATAACCGTAGGTGAAATTATTTTCTTCACATAATTCAATAATCTT 928 Query 71990 TTGTGTTACAGTATCATTTTTATAGGTTTTGTTTTTCCATCGGTAATATGTTGATTTAGG 72049 ||| || || |||| |||| || | | |||| |||||||| || ||||| |||||||| Sbjct 927 TTGAGTCACTTTATCTTTTTCATTGTTCTTGTGTTTCCATCTATAGTATGTCGATTTAGG 868 Query 72050 TATGTTTAATACTTCTAGTATCAATTTGATTGAATATTTTACTTTTAATTGATCCACTAA 72109 ||| | ||| || || ||||||| |||||||||||| || |||||||||| ||||| Sbjct 867 TATTTCTAAAACATCAAGTATCATTTTGATTGAATACTTATGCTTTAATTGATTAACTAA 808 Query 72110 ATCTATGACTACTGCTGGTACCACTTCCTTTCCAATGCCTTGTACttttttaaaatatcc 72169 |||| | |||| ||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 807 TTCTACAATTACTTTTGGTACCACTTCCTTTCTAATTCCTTGTACTTTTTTAAAATATCT 748 Query 72170 aattctatatcttttctcttattttctaattttaatcgttctatttctGACAATTCTTCT 72229 ||||| ||||||||| ||||||| ||||| |||||| ||||||||||||| ||||||| Sbjct 747 AATTCAATATCTTTTTTCTTATTATCTAACTTTAATTGTTCTATTTCTGATAATTCTTTC 688 Query 72230 AATCCTTTACCGTAGGTATATTGTTTCCCAACGTGTTGTGAAAATCTATAACTTTCCTCA 72289 | |||||| || || |||||||| || || ||||| ||||||||||| |||| || Sbjct 687 ACTCCTTTGCCATAAGTATATTGCTTGCCTCTTTGTTGATAAAATCTATAAGTTTCACCA 628 Query 72290 TTTCGATACCATCGCCACCAAGTTTCCACTTGTGTTCTATTTTTAATATTTAATTCTTTC 72349 ||||||||||||||||||||||||| || ||||| || ||||| ||||||||| ||| | Sbjct 627 TTTCGATACCATCGCCACCAAGTTTTTACCTGTGTGCTGTTTTTGATATTTAATACTTCC 568 Query 72350 ATAATTTCTTTTGTCGAAAAACCAGCTATTTTCATTTCAACTGCTTTATACTTTGTTTCT 72409 |||||||||||| | | | |||||| ||||||||||| | ||||| ||||||||| Sbjct 567 ATAATTTCTTTTACAGTATATCCAGCTTCTTTCATTTCAATAGTCTTATATTTTGTTTCT 508 Query 72410 ACTGAATAAGAAACTCTTTTCATAGAAAAAACACCTCCGCATGATTCATTTTATTATGAA 72469 | ||||||||| | | |||||||| |||||||||||||| ||||||||||||| ||||| Sbjct 507 ATTGAATAAGACATTATTTTCATATAAAAAACACCTCCGTATGATTCATTTTA-AATGAA 449 Query 72470 TTCAACGAAAGTGTTTTTATATAATTCCCACTAATTGGGGTCAGTCCAT 72518 |||||||||||||||||||| | ||||||||| ||||||||||| ||| Sbjct 448 TTCAACGAAAGTGTTTTTATTTCCTTCCCACTATTTGGGGTCAGTTCAT 400 >seq4194 Length=4202 Score = 109 bits (120), Expect = 4e-19 Identities = 280/413 (68%), Gaps = 25/413 (6%) Strand=Plus/Minus Query 91040 ATATTAGCAACTTCTGTAATTATAATATGTATAGAAACACCTGTTAAACTAAAGATAGTT 91099 |||||| | | ||| || | ||| | ||| || || ||| | || ||| | |||| | Sbjct 4140 ATATTAACCAATTCCGTTACTATTACATGCATTGATACATCAGTCAAAAACATAATAGAT 4081 Query 91100 ACTAGCAATGATAAACCTATTGCAAAGAATAAATACAGTAACGGGTTAGCTCCTTCACTT 91159 || || | |||||| |||| ||| ||| | | || | || ||||||| ||| || | Sbjct 4080 ACCAGTACTGATAACCCTAATGCGAAGTAATAGTATAAAAATGGGTTAGTTCCATCTGCT 4021 Query 91160 GTTTTCTTTCTAATAAAGTGAATGATTTGATCAATGTA-GCTAACACAATTGAAACTGTC 91218 |||| |||||||||||||| ||||| || ||||| |||| | || || | ||| Sbjct 4020 CTTTTAGTTCTAATAAAGTGAGCAATTTGGTCTATGTATGCTAGTATAACTGCTATTGTT 3961 Query 91219 GCCACTGTCTGACTTACTTCCAATGATA--GATGACTAAAGATTACAAGTGCTAATAGTA 91276 || || || ||| |||| | |||| || ||| |||| | || | || ||| | | Sbjct 3960 GCTACAGTTTGAGTTACAACTAATGGTAATGATTGATAAACA-TATACGT-TTAAGAAGA 3903 Query 91277 TGTATAGTAATGAGAATATGATCGCAATTGGCTTTTCCAA---TCTCTTAA---AGTTGA 91330 |||||| | ||| | || | | | || | | |||| ||||||| |||| | Sbjct 3902 TGTATA--ACAGAGTA-ATAAACAAAGTTAAC--TCCCAACGCACTCTTAAACCAGTT-A 3849 Query 91331 GCCAAATTACAA----TAATGAGTGCTACACCAGCGTTAATAAACTGTCCTAAATAGATA 91386 ||| ||||| |||| | || || ||||| |||||||||||| |||| || || Sbjct 3848 TCCA---TACAAATAGTAAT-AAAGCAACTCCAGCATTAATAAACTGTGCTAAGTATGTA 3793 Query 91387 TACCATTCAGCATTACCAGTTCGTAGTACATTTAATAAGCTAAACAAAGTTGA 91439 |||||||||||||||||||| || || || || || ||| | | ||||| Sbjct 3792 TACCATTCAGCATTACCAGTAGCTAATAAGTTAAACAAACTATAAGATGTTGA 3740 >seq2330 Length=6210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 125431 GTATGCGGTATAGTAtttttttCATCTAGTTGACCTTCTACTGAAGATTCGACTTCCCAG 125490 || || |||| ||| ||||||||||| |||| || | | || || || ||| Sbjct 4845 GTGTGTGGTAAAGTGTTTTTTTCATCGAGTTCGCCAGATTCAGATGAAAGAACCGTCCAA 4904 Query 125491 TTTTCGAATGTGTATGGTGGAAAGAATGTGTCTCCTTGAAACTTTCCATCTATTACTGTG 125550 | || ||| |||||| || || || | || ||||||||||| | ||||||||||| Sbjct 4905 TCTTTGAAGTCGTATGGAGGGAAAAAGGCATCACCTTGAAACTTATCTTCTATTACTGTT 4964 Query 125551 ATATACATATCATCTACCTGGTCAATCATTGCTTCGTATAACGTTTGTCCTCCAAATATA 125610 | |||||||||||| || |||| |||||| ||| || | ||| || ||||| || Sbjct 4965 ACATACATATCATCAACGCGGTCCATCATTTGTTCATAAAGACCTTGACCGCCAAAGATG 5024 Query 125611 AAAACATGACC 125621 || | ||| || Sbjct 5025 AAGATATGTCC 5035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408479258452475