Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_029119.1
Length=127726
Score E
Sequences producing significant alignments: (Bits) Value
seq2569 922 0.0
seq4194 109 4e-19
seq2330 87.8 1e-12
>seq2569
Length=43619
Score = 922 bits (1022), Expect = 0.0
Identities = 781/949 (82%), Gaps = 9/949 (1%)
Strand=Plus/Minus
Query 71578 TCACTATGTAATATACACCCCTCGGGTATATCGATTTGATTT-AATGTATCATTAACTAA 71636
|||||||||| ||| || ||| |||||||| ||||||||| ||||||||||| | |||
Sbjct 1347 TCACTATGTAGTATGCAATTCTCAGGTATATCTATTTGATTTCAATGTATCATTTAATAA 1288
Query 71637 A-CTTTGGTCTTGTTTATCATCTATTTTATACGCCACAATTTCTCCGTTATAAATATCC- 71694
| ||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1287 AGCTTTGATCTTGTTTGTTATCTATTTTATACGCCACAATTTCTCCGTTATAAACATCCC 1228
Query 71695 ATTATCGAAGATAAATACA-CATAGAATGACCAAATGGTAAATAAGTAATATCGGTTGTT 71753
|| || ||||||||||||| |||||| | ||| || ||||||||||||||||| ||||||
Sbjct 1227 ATAATTGAAGATAAATACAACATAGAGTTACCGAAAGGTAAATAAGTAATATCAGTTGTT 1168
Query 71754 AA-TACTTCCATGGGACAACTCGCTTTAAATTGTCTTTGTAATAAATTGTCAGTTT-ATA 71811
|| ||||||||| || | |||||||| ||||||||||||||||| || |||| |||
Sbjct 1167 AAATACTTCCATTGGTTGGTTAGCTTTAAACTGTCTTTGTAATAAATTCTCTGTTTTATA 1108
Query 71812 ATACGGTTTACCTATCCTTGTCG-TCTTTTAGGTCTAACTCGGCAGT-CAAATGATGCTT 71869
||| ||||| || || || | | | ||||||| ||||||||||||| || || || ||
Sbjct 1107 ATAAGGTTTGCCAATTTTTTTAGATTTTTTAGGCCTAACTCGGCAGTTCAGATTATACTC 1048
Query 71870 CTGCATAATTCTCTGTACTCTCTTATGATTAATTGGTGATGTATAACATTGATTAATCAG 71929
|||| |||| ||| ||||| ||||||||||||| || || ||| ||||||||||||
Sbjct 1047 TCGCATGATTCGCTGAACTCTTTTATGATTAATTGATGCTGAATACAATTGATTAATCAA 988
Query 71930 TGCTGTAATCTTACGATAACCGTAGGTATAGTGGTTAGCTTCACATAATTCAATAACTTT 71989
|||||||| || |||||||||||||| | | || |||||||||||||||||| ||
Sbjct 987 CGCTGTAATTTTGCGATAACCGTAGGTGAAATTATTTTCTTCACATAATTCAATAATCTT 928
Query 71990 TTGTGTTACAGTATCATTTTTATAGGTTTTGTTTTTCCATCGGTAATATGTTGATTTAGG 72049
||| || || |||| |||| || | | |||| |||||||| || ||||| ||||||||
Sbjct 927 TTGAGTCACTTTATCTTTTTCATTGTTCTTGTGTTTCCATCTATAGTATGTCGATTTAGG 868
Query 72050 TATGTTTAATACTTCTAGTATCAATTTGATTGAATATTTTACTTTTAATTGATCCACTAA 72109
||| | ||| || || ||||||| |||||||||||| || |||||||||| |||||
Sbjct 867 TATTTCTAAAACATCAAGTATCATTTTGATTGAATACTTATGCTTTAATTGATTAACTAA 808
Query 72110 ATCTATGACTACTGCTGGTACCACTTCCTTTCCAATGCCTTGTACttttttaaaatatcc 72169
|||| | |||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 807 TTCTACAATTACTTTTGGTACCACTTCCTTTCTAATTCCTTGTACTTTTTTAAAATATCT 748
Query 72170 aattctatatcttttctcttattttctaattttaatcgttctatttctGACAATTCTTCT 72229
||||| ||||||||| ||||||| ||||| |||||| ||||||||||||| |||||||
Sbjct 747 AATTCAATATCTTTTTTCTTATTATCTAACTTTAATTGTTCTATTTCTGATAATTCTTTC 688
Query 72230 AATCCTTTACCGTAGGTATATTGTTTCCCAACGTGTTGTGAAAATCTATAACTTTCCTCA 72289
| |||||| || || |||||||| || || ||||| ||||||||||| |||| ||
Sbjct 687 ACTCCTTTGCCATAAGTATATTGCTTGCCTCTTTGTTGATAAAATCTATAAGTTTCACCA 628
Query 72290 TTTCGATACCATCGCCACCAAGTTTCCACTTGTGTTCTATTTTTAATATTTAATTCTTTC 72349
||||||||||||||||||||||||| || ||||| || ||||| ||||||||| ||| |
Sbjct 627 TTTCGATACCATCGCCACCAAGTTTTTACCTGTGTGCTGTTTTTGATATTTAATACTTCC 568
Query 72350 ATAATTTCTTTTGTCGAAAAACCAGCTATTTTCATTTCAACTGCTTTATACTTTGTTTCT 72409
|||||||||||| | | | |||||| ||||||||||| | ||||| |||||||||
Sbjct 567 ATAATTTCTTTTACAGTATATCCAGCTTCTTTCATTTCAATAGTCTTATATTTTGTTTCT 508
Query 72410 ACTGAATAAGAAACTCTTTTCATAGAAAAAACACCTCCGCATGATTCATTTTATTATGAA 72469
| ||||||||| | | |||||||| |||||||||||||| ||||||||||||| |||||
Sbjct 507 ATTGAATAAGACATTATTTTCATATAAAAAACACCTCCGTATGATTCATTTTA-AATGAA 449
Query 72470 TTCAACGAAAGTGTTTTTATATAATTCCCACTAATTGGGGTCAGTCCAT 72518
|||||||||||||||||||| | ||||||||| ||||||||||| |||
Sbjct 448 TTCAACGAAAGTGTTTTTATTTCCTTCCCACTATTTGGGGTCAGTTCAT 400
>seq4194
Length=4202
Score = 109 bits (120), Expect = 4e-19
Identities = 280/413 (68%), Gaps = 25/413 (6%)
Strand=Plus/Minus
Query 91040 ATATTAGCAACTTCTGTAATTATAATATGTATAGAAACACCTGTTAAACTAAAGATAGTT 91099
|||||| | | ||| || | ||| | ||| || || ||| | || ||| | |||| |
Sbjct 4140 ATATTAACCAATTCCGTTACTATTACATGCATTGATACATCAGTCAAAAACATAATAGAT 4081
Query 91100 ACTAGCAATGATAAACCTATTGCAAAGAATAAATACAGTAACGGGTTAGCTCCTTCACTT 91159
|| || | |||||| |||| ||| ||| | | || | || ||||||| ||| || |
Sbjct 4080 ACCAGTACTGATAACCCTAATGCGAAGTAATAGTATAAAAATGGGTTAGTTCCATCTGCT 4021
Query 91160 GTTTTCTTTCTAATAAAGTGAATGATTTGATCAATGTA-GCTAACACAATTGAAACTGTC 91218
|||| |||||||||||||| ||||| || ||||| |||| | || || | |||
Sbjct 4020 CTTTTAGTTCTAATAAAGTGAGCAATTTGGTCTATGTATGCTAGTATAACTGCTATTGTT 3961
Query 91219 GCCACTGTCTGACTTACTTCCAATGATA--GATGACTAAAGATTACAAGTGCTAATAGTA 91276
|| || || ||| |||| | |||| || ||| |||| | || | || ||| | |
Sbjct 3960 GCTACAGTTTGAGTTACAACTAATGGTAATGATTGATAAACA-TATACGT-TTAAGAAGA 3903
Query 91277 TGTATAGTAATGAGAATATGATCGCAATTGGCTTTTCCAA---TCTCTTAA---AGTTGA 91330
|||||| | ||| | || | | | || | | |||| ||||||| |||| |
Sbjct 3902 TGTATA--ACAGAGTA-ATAAACAAAGTTAAC--TCCCAACGCACTCTTAAACCAGTT-A 3849
Query 91331 GCCAAATTACAA----TAATGAGTGCTACACCAGCGTTAATAAACTGTCCTAAATAGATA 91386
||| ||||| |||| | || || ||||| |||||||||||| |||| || ||
Sbjct 3848 TCCA---TACAAATAGTAAT-AAAGCAACTCCAGCATTAATAAACTGTGCTAAGTATGTA 3793
Query 91387 TACCATTCAGCATTACCAGTTCGTAGTACATTTAATAAGCTAAACAAAGTTGA 91439
|||||||||||||||||||| || || || || || ||| | | |||||
Sbjct 3792 TACCATTCAGCATTACCAGTAGCTAATAAGTTAAACAAACTATAAGATGTTGA 3740
>seq2330
Length=6210
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 125431 GTATGCGGTATAGTAtttttttCATCTAGTTGACCTTCTACTGAAGATTCGACTTCCCAG 125490
|| || |||| ||| ||||||||||| |||| || | | || || || |||
Sbjct 4845 GTGTGTGGTAAAGTGTTTTTTTCATCGAGTTCGCCAGATTCAGATGAAAGAACCGTCCAA 4904
Query 125491 TTTTCGAATGTGTATGGTGGAAAGAATGTGTCTCCTTGAAACTTTCCATCTATTACTGTG 125550
| || ||| |||||| || || || | || ||||||||||| | |||||||||||
Sbjct 4905 TCTTTGAAGTCGTATGGAGGGAAAAAGGCATCACCTTGAAACTTATCTTCTATTACTGTT 4964
Query 125551 ATATACATATCATCTACCTGGTCAATCATTGCTTCGTATAACGTTTGTCCTCCAAATATA 125610
| |||||||||||| || |||| |||||| ||| || | ||| || ||||| ||
Sbjct 4965 ACATACATATCATCAACGCGGTCCATCATTTGTTCATAAAGACCTTGACCGCCAAAGATG 5024
Query 125611 AAAACATGACC 125621
|| | ||| ||
Sbjct 5025 AAGATATGTCC 5035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408479258452475
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |