Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq276 89.7 4e-13 seq2302 84.2 2e-11 >seq276 Length=376631 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||| |||||||||||||||||||| ||| || || | || || ||| Sbjct 240509 AAGATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTTGGAAGTAGAATCA 240568 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | | || || ||| ||||| ||||||||||| | || || Sbjct 240569 TCAGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGAT 240628 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || ||||||||||||||||| |||||||| || | || | || ||||| || Sbjct 240629 CAACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTAT 240688 Query 27967 AACATCCAAAAAGA 27980 || || || ||||| Sbjct 240689 AATATTCAGAAAGA 240702 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||||||||| |||||||| ||| || || | || || ||| | Sbjct 240739 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 240798 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || ||| ||||| ||||||||||| | || || || Sbjct 240799 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 240858 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 || || ||||||||||||||||| |||||||| || | || | || ||||| || || Sbjct 240859 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAA 240918 Query 27969 CATCCAAAAAGA 27980 || || ||||| Sbjct 240919 TATTCAGAAAGA 240930 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||||||||| |||||||| ||| || || | || || ||| | Sbjct 241195 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241254 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || ||| ||||| ||||||||||| | || || || Sbjct 241255 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241314 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 || || ||||||||||||||||| |||||||| || | || | || ||||| || || Sbjct 241315 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAA 241374 Query 27969 CATCCAAAAAGA 27980 || || ||||| Sbjct 241375 TATTCAGAAAGA 241386 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||||||||| |||||||| ||| || || | || || ||| | Sbjct 241423 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 241482 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || ||| ||||| ||||||||||| | || || || Sbjct 241483 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241542 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 || || ||||||||||||||||| |||||||| || | || | || ||||| || || Sbjct 241543 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATAA 241602 Query 27969 CATCCAAAAAGA 27980 || || ||||| Sbjct 241603 TATTCAGAAAGA 241614 >seq2302 Length=121279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || |||||| | || || ||| | Sbjct 54330 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 54271 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| || || |||||||||||| | || || | Sbjct 54270 GATTCCATTGAAAAT--GTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACC 54213 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || ||||||||||| ||| | || |||| ||| | | | ||||| |||| Sbjct 54212 AACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACA 54153 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||| |||||||| || | || ||||| ||||| Sbjct 54152 ACATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 54116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || ||||| || || ||||||||||| ||| | || Sbjct 54465 GACAAAGAAGGTATTCCACCTGACCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAA 54406 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | || || ||||||||||| ||||| || | || || || ||| Sbjct 54405 GACGGACGCACACTTTCTGACTACAACATCCAGAAAGAATCTACCCTTCACTTAGTGTTG 54346 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 54345 CGTCTCCGTGGTGG 54332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355758635528475