Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2302 152 1e-31 seq231 129 1e-24 seq4 84.2 5e-11 >seq2302 Length=121279 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| |||||||| || | |||||| | ||||||||| || || Sbjct 52531 GTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATCTTCAAGTTG 52590 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| || ||||| ||||| || || | ||||||||||| |||||||| Sbjct 52591 CTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 52650 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||| ||||| || | ||||| ||| || || | || || |||||||| || Sbjct 52651 GGCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATGGTCTTTCCTGT 52710 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || | ||||| Sbjct 52711 GAGGGTCTTTACGAAGATTTGCAT 52734 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || || Sbjct 54127 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 54186 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | ||||||||||| || || | ||||| ||||| |||||||| Sbjct 54187 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 54246 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| |||| ||||| ||| ||||| | || || |||||||| || Sbjct 54247 GGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGT 54306 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||||||||| | ||||| Sbjct 54307 GAGGGTCTTTACAAAGATTTGCAT 54330 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| | || | |||||| || || |||||||| |||||||| || | ||| || Sbjct 52742 CGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGTG 52801 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| ||||| || ||||| || || ||||| | ||||||||||| || || | ||| Sbjct 52802 CGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCT 52861 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| |||||||| || || ||||| |||| ||||| ||| ||||| | Sbjct 52862 TCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAAT 52921 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| ||||| ||||| || || | ||||| Sbjct 52922 GTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 52962 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || ||||| |||||||| || || | ||| || | ||| ||||| || || Sbjct 54355 GTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTCTTCAAGTTG 54414 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | |||||||||||||| |||| ||||| ||||| |||||||| Sbjct 54415 CTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTGGATCTT 54474 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| |||| || || ||||| || | |||||| || || || || Sbjct 54475 AGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGTTTTACCAGT 54534 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 | ||| || ||||| | |||||| || Sbjct 54535 CAAAGTTTTGACAAAGATCTGCATGTT 54561 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || || Sbjct 52987 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 53046 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | ||||| ||||| || || | ||||||||||| |||||||| Sbjct 53047 CTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 53106 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| |||| ||||| ||| ||||| | || || |||||||| || Sbjct 53107 GGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGT 53166 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | ||||| Sbjct 53167 GAGGGTCTTAACGAAGATTTGCAT 53190 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || || Sbjct 53215 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 53274 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | ||||| ||||| || || | ||||||||||| |||||||| Sbjct 53275 CTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 53334 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| |||| ||||| ||| ||||| | || || |||||||| || Sbjct 53335 GGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGT 53394 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | ||||| Sbjct 53395 GAGGGTCTTAACGAAGATTTGCAT 53418 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || || Sbjct 53443 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 53502 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | ||||||||||| || || | ||||||||||| |||||||| Sbjct 53503 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 53562 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| || | ||||| ||| || || | || || |||||||| || Sbjct 53563 AGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGT 53622 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | ||||| Sbjct 53623 GAGGGTCTTAACGAAGATTTGCAT 53646 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || || Sbjct 53899 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 53958 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | |||||||| || || || | ||||||||||| |||||||| Sbjct 53959 CTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATCTT 54018 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| || | ||||| ||| || || | || || |||||||| || Sbjct 54019 AGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGT 54078 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | |||||| Sbjct 54079 GAGGGTCTTAACGAAGATCTGCAT 54102 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || || Sbjct 53671 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 53730 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | ||||| ||||| || || | ||||||||||| |||||||| Sbjct 53731 CTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 53790 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| || | ||||| ||| || || | || || |||||||| || Sbjct 53791 AGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGT 53850 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | ||||| Sbjct 53851 GAGGGTCTTAACGAAGATTTGCAT 53874 >seq231 Length=580210 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||||||||| | | || | ||||||||| ||||||||||| |||||||| Sbjct 340831 TTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 340890 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | |||||||| || || || | ||||| || || ||||| || ||| || |||||| Sbjct 340891 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCG 340950 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || ||||| || || ||||| || ||||| ||||| || || || || || || || Sbjct 340951 ATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAA 341010 Query 211107 ACCTGCATTTT 211117 | ||||| || Sbjct 341011 ATTTGCATGTT 341021 >seq4 Length=2478080 Score = 84.2 bits (92), Expect = 5e-11 Identities = 145/210 (69%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| || |||||||||||||| || || | | | || | || | ||| || || Sbjct 1881876 GTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAACGAGTACATCTGTGTTCTAGTTG 1881817 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGG---AGGAACTCCTTCCTTGTCCTGGAT 211027 || || || ||| | | ||||||||||| || | | ||||| | || ||||| Sbjct 1881816 ATTTCCAGCAAAGGTCAAACGTTGTTGGTCTGGTGCGGCGATGCCTTCTTGTTCTTGGAT 1881757 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| ||| || ||||| |||| || || ||||| || | | |||| || || || Sbjct 1881756 CTTGGCTTTTACTTTTTCAATGGAATCTGATGACTCAACTTCCAAAATGATAGTTTTACC 1881697 Query 211088 CGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || | ||| || ||||| | ||| || || Sbjct 1881696 AGTCAAAGTTTTGACAAAGATCTGTATGTT 1881667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158796674632625