Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 152 1e-31
seq231 129 1e-24
seq4 84.2 5e-11
>seq2302
Length=121279
Score = 152 bits (168), Expect = 1e-31
Identities = 156/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|||||| || || |||||||| |||||||| || | |||||| | ||||||||| || ||
Sbjct 52531 GTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATCTTCAAGTTG 52590
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || ||||| || ||||| ||||| || || | ||||||||||| ||||||||
Sbjct 52591 CTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 52650
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
||||| ||||| || | ||||| ||| || || | || || |||||||| ||
Sbjct 52651 GGCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATGGTCTTTCCTGT 52710
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
||| |||||||| || | |||||
Sbjct 52711 GAGGGTCTTTACGAAGATTTGCAT 52734
Score = 152 bits (168), Expect = 1e-31
Identities = 156/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || ||
Sbjct 54127 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 54186
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || ||||| | ||||||||||| || || | ||||| ||||| ||||||||
Sbjct 54187 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 54246
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
||| || ||||| |||| ||||| ||| ||||| | || || |||||||| ||
Sbjct 54247 GGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGT 54306
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
||| ||||||||||| | |||||
Sbjct 54307 GAGGGTCTTTACAAAGATTTGCAT 54330
Score = 147 bits (162), Expect = 5e-30
Identities = 165/221 (75%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| | || | |||||| || || |||||||| |||||||| || | ||| ||
Sbjct 52742 CGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGTG 52801
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||| ||||| || ||||| || || ||||| | ||||||||||| || || | |||
Sbjct 52802 CGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCT 52861
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|||||||| |||||||| || || ||||| |||| ||||| ||| ||||| |
Sbjct 52862 TCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAAT 52921
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || |||||||| ||||| ||||| || || | |||||
Sbjct 52922 GTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 52962
Score = 140 bits (154), Expect = 8e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|||||| || || ||||| |||||||| || || | ||| || | ||| ||||| || ||
Sbjct 54355 GTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTCTTCAAGTTG 54414
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || ||||| | |||||||||||||| |||| ||||| ||||| ||||||||
Sbjct 54415 CTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTGGATCTT 54474
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
||| || ||||| |||| || || ||||| || | |||||| || || || ||
Sbjct 54475 AGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGTTTTACCAGT 54534
Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117
| ||| || ||||| | |||||| ||
Sbjct 54535 CAAAGTTTTGACAAAGATCTGCATGTT 54561
Score = 138 bits (152), Expect = 3e-27
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || ||
Sbjct 52987 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 53046
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || ||||| | ||||| ||||| || || | ||||||||||| ||||||||
Sbjct 53047 CTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 53106
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| || ||||| |||| ||||| ||| ||||| | || || |||||||| ||
Sbjct 53107 GGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGT 53166
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| || || | |||||
Sbjct 53167 GAGGGTCTTAACGAAGATTTGCAT 53190
Score = 138 bits (152), Expect = 3e-27
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || ||
Sbjct 53215 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 53274
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || ||||| | ||||| ||||| || || | ||||||||||| ||||||||
Sbjct 53275 CTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 53334
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| || ||||| |||| ||||| ||| ||||| | || || |||||||| ||
Sbjct 53335 GGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGT 53394
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| || || | |||||
Sbjct 53395 GAGGGTCTTAACGAAGATTTGCAT 53418
Score = 134 bits (148), Expect = 3e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || ||
Sbjct 53443 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 53502
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || ||||| | ||||||||||| || || | ||||||||||| ||||||||
Sbjct 53503 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 53562
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| || ||||| || | ||||| ||| || || | || || |||||||| ||
Sbjct 53563 AGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGT 53622
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| || || | |||||
Sbjct 53623 GAGGGTCTTAACGAAGATTTGCAT 53646
Score = 134 bits (148), Expect = 3e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || ||
Sbjct 53899 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 53958
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || ||||| | |||||||| || || || | ||||||||||| ||||||||
Sbjct 53959 CTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATCTT 54018
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| || ||||| || | ||||| ||| || || | || || |||||||| ||
Sbjct 54019 AGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGT 54078
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| || || | ||||||
Sbjct 54079 GAGGGTCTTAACGAAGATCTGCAT 54102
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|||||| || || |||||||| ||||| || || | |||||| | ||| ||||| || ||
Sbjct 53671 GTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTG 53730
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || ||||| | ||||| ||||| || || | ||||||||||| ||||||||
Sbjct 53731 CTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 53790
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| || ||||| || | ||||| ||| || || | || || |||||||| ||
Sbjct 53791 AGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGT 53850
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| || || | |||||
Sbjct 53851 GAGGGTCTTAACGAAGATTTGCAT 53874
>seq231
Length=580210
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||||||||| | | || | ||||||||| ||||||||||| ||||||||
Sbjct 340831 TTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 340890
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| |||||||| || || || | ||||| || || ||||| || ||| || ||||||
Sbjct 340891 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCG 340950
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106
|| ||||| || || ||||| || ||||| ||||| || || || || || || ||
Sbjct 340951 ATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAA 341010
Query 211107 ACCTGCATTTT 211117
| ||||| ||
Sbjct 341011 ATTTGCATGTT 341021
>seq4
Length=2478080
Score = 84.2 bits (92), Expect = 5e-11
Identities = 145/210 (69%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||||||||| || |||||||||||||| || || | | | || | || | ||| || ||
Sbjct 1881876 GTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAACGAGTACATCTGTGTTCTAGTTG 1881817
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGG---AGGAACTCCTTCCTTGTCCTGGAT 211027
|| || || ||| | | ||||||||||| || | | ||||| | || |||||
Sbjct 1881816 ATTTCCAGCAAAGGTCAAACGTTGTTGGTCTGGTGCGGCGATGCCTTCTTGTTCTTGGAT 1881757
Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087
||| ||| || ||||| |||| || || ||||| || | | |||| || || ||
Sbjct 1881756 CTTGGCTTTTACTTTTTCAATGGAATCTGATGACTCAACTTCCAAAATGATAGTTTTACC 1881697
Query 211088 CGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| | ||| || ||||| | ||| || ||
Sbjct 1881696 AGTCAAAGTTTTGACAAAGATCTGTATGTT 1881667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158796674632625
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