Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2302 86.0 5e-12 >seq2302 Length=121279 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || |||||||| || || || |||| ||| || ||| || Sbjct 54116 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 54175 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || ||||| || || || ||||| || | ||| || ||||| |||||| || ||||| Sbjct 54176 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCT-TCTTT 54234 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || ||| | | | | | ||| || ||||| |||| || || Sbjct 54235 GTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAAT 54294 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || || |||||||||||||| Sbjct 54295 GGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429420350543525