Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq276 145 5e-30
seq2302 129 4e-25
seq86 93.3 3e-14
seq1265 82.4 5e-11
>seq276
Length=376631
Score = 145 bits (160), Expect = 5e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || |||||||| || || ||||| |||||| | ||||| || || |
Sbjct 241423 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 241482
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| || |||||| | ||| |||||| ||||||||||| | || ||||||||
Sbjct 241483 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241542
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| ||||| |||||||| || ||| ||||||| | || |||||| ||| || ||
Sbjct 241543 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATAA 241602
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || ||||| || ||| | || |||||
Sbjct 241603 TATTCAGAAAGAATCAACACTTCACTTAGT 241632
Score = 140 bits (154), Expect = 2e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || |||||||| || || ||||| |||||| | ||||| || || |
Sbjct 240739 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 240798
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| || |||||| | ||| |||||| ||||||||||| | || ||||||||
Sbjct 240799 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 240858
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| ||||| |||||||| || ||| ||||||| | || || ||| ||| || ||
Sbjct 240859 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAA 240918
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || ||||| || ||| | || |||||
Sbjct 240919 TATTCAGAAAGAATCAACACTTCACTTAGT 240948
Score = 140 bits (154), Expect = 2e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || |||||||| || || ||||| |||||| | ||||| || || |
Sbjct 241195 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241254
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| || |||||| | ||| |||||| ||||||||||| | || ||||||||
Sbjct 241255 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGGATCCCACCAGATCA 241314
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| ||||| |||||||| || ||| ||||||| | || || ||| ||| || ||
Sbjct 241315 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAA 241374
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || ||||| || ||| | || |||||
Sbjct 241375 TATTCAGAAAGAATCAACACTTCACTTAGT 241404
Score = 136 bits (150), Expect = 3e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664
|| || ||||| || || || ||||| || || |||||||| || ||| | ||||| ||
Sbjct 240506 CTCAAGATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTTGGAAGTAGAA 240565
Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724
|| | ||| || |||||| | ||| |||||| ||||||||||| | || |||
Sbjct 240566 TCATCAGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCA 240625
Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784
||||||||||| ||||| |||||||| || ||| ||||||| | || || ||| |||
Sbjct 240626 GATCAACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGAC 240685
Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || || || ||||| || ||| | || |||||
Sbjct 240686 TATAATATTCAGAAAGAATCAACACTTCACTTAGT 240720
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || |||||||| || || ||||| |||||| | ||||| || || |
Sbjct 240967 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241026
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||||| | ||| |||||| ||||||||||| | || ||||||||
Sbjct 241027 AGATTCTATTGAAAATGTGAAAGCGAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 241086
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| ||||| |||||||| || ||| ||||||| | || || ||| || || ||
Sbjct 241087 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCTGACTATAA 241146
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || ||||| || ||| | || |||||
Sbjct 241147 TATTCAGAAAGAATCAACACTTCACTTAGT 241176
>seq2302
Length=121279
Score = 129 bits (142), Expect = 4e-25
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| |||||||| ||||| || || || | ||||| || || |
Sbjct 54102 ATGCAGATCTTCGTTAAGACCCTCACAGGAAAGACCATTACATTGGAAGTGGAATCGTCT 54043
Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||||| | |||| | || | | ||||| |||||| | || ||||||||
Sbjct 54042 GATTCTATTGAAAATGTTAAGGCTAAGA-TCCAAGACAAGGAAGGTATCCCACCAGATCA 53984
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| || ||||| || || ||||| ||||||| ||| || | ||| |||||
Sbjct 53983 ACAACGTTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAA 53924
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
||| |||||||| || ||| | || || || ||
Sbjct 53923 CATTCAAAAAGAATCTACACTTCACTTGGTGTT 53891
Score = 122 bits (134), Expect = 6e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || ||||| | || || ||||| |||||| | |||||||| ||
Sbjct 54561 AACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCA 54502
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || | |||||| ||||| || || |||||||||||| | || || ||
Sbjct 54501 TCAGATTCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCACCTGAC 54442
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
||||| ||||| || |||||||| || ||||| ||||||| |||||| | || |||
Sbjct 54441 CAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCTGACTAC 54382
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
||||| || ||||| || || | || ||||| ||
Sbjct 54381 AACATCCAGAAAGAATCTACCCTTCACTTAGTGTT 54347
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || |||||||| ||||| || || || | || || || || |
Sbjct 54330 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 54271
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| | |||||| ||||| || || |||||||||||| | || ||||| |||
Sbjct 54270 GATTCCATTGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 54211
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||||| || |||||||| || ||||| ||||||| ||| || | ||| ||||||
Sbjct 54210 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 54151
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
|| |||||||| || ||| | || || || ||
Sbjct 54150 ATTCAAAAAGAATCTACACTTCACTTGGTGTT 54119
>seq86
Length=815150
Score = 93.3 bits (102), Expect = 3e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771
|||| | || || ||||| || ||||| |||||||||||||||||||| ||||| | ||
Sbjct 596566 AGGTATTCCTCCGGATCAGCAACGTTTGATATTTGCCGGCAAACAACTTGAAGATGGCCG 596507
Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCG 23831
||||| ||||||||||| |||||||| || || | || || ||| | || || |
Sbjct 596506 TACTTTGTCAGATTACAACATTCAAAAAGAATCTACCCTCCACTTGGTTCTTAGACTGAG 596447
Query 23832 AGGAGG 23837
||| ||
Sbjct 596446 AGGTGG 596441
>seq1265
Length=163832
Score = 82.4 bits (90), Expect = 5e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||| ||||| ||||||||||| ||||| ||||| || |||||||| ||||| ||
Sbjct 83867 AAGATGCAAATTTTTGTTAAAACCCTTACGGGTAAAACAATTACTCTCGAGGTTGAGTCA 83926
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGT 23715
| || || |||||| ||||| |||||| || |||||||||
Sbjct 83927 TCAGATTCTATTGAAAATGTAAAATCTAAAATTCAAGATAAAGAAGGT 83974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337911041153900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |