Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq35 167 2e-36
seq1042 125 6e-24
>seq35
Length=1961283
Score = 167 bits (184), Expect = 2e-36
Identities = 164/211 (78%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844
|||| || |||||||| | ||||||||||||||| ||||| |||| || |||||||
Sbjct 1196856 TTAACAAACTTACTTTTCTTT--TGGGTCTTGAATATATGTGTCAATTAATAAGCTATAC 1196799
Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904
||||| |||||||||||||| || || || || || ||||| |||||||| || |||
Sbjct 1196798 ATTTCTGAATGTATATTTTCCATCATTATTTGGAACCCATAAAAACATCTAGCCTCAGTT 1196739
Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964
||||||||||| | | | |||||||| || | ||||| || || || || || ||
Sbjct 1196738 ACTTGAACTTCTTGAGAGAATCTTTCAACAAGATTTTCATTGACAATGCCATCTGAAGCA 1196679
Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGT 4995
|||||||| || || || |||||||||||||
Sbjct 1196678 GCAAAAAATGCTAATACGTGAGATATAAAGT 1196648
>seq1042
Length=111944
Score = 125 bits (138), Expect = 6e-24
Identities = 140/187 (75%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
||||||| |||||| || ||||||| || |||||||||||| ||||||||||| |||||
Sbjct 80524 GGGTCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATC 80583
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928
|| || || || ||||| |||||||| || |||||||||||||| | | |||||| |
Sbjct 80584 ATTATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGT 80643
Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988
| || | ||||| | ||||| || | || || ||||| || | | | |||
Sbjct 80644 TTAACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGAT 80703
Query 4989 ATAAAGT 4995
|||||||
Sbjct 80704 ATAAAGT 80710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426925078342025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |