Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq35 167 2e-36 seq1042 125 6e-24 >seq35 Length=1961283 Score = 167 bits (184), Expect = 2e-36 Identities = 164/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 |||| || |||||||| | ||||||||||||||| ||||| |||| || ||||||| Sbjct 1196856 TTAACAAACTTACTTTTCTTT--TGGGTCTTGAATATATGTGTCAATTAATAAGCTATAC 1196799 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 ||||| |||||||||||||| || || || || || ||||| |||||||| || ||| Sbjct 1196798 ATTTCTGAATGTATATTTTCCATCATTATTTGGAACCCATAAAAACATCTAGCCTCAGTT 1196739 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 ||||||||||| | | | |||||||| || | ||||| || || || || || || Sbjct 1196738 ACTTGAACTTCTTGAGAGAATCTTTCAACAAGATTTTCATTGACAATGCCATCTGAAGCA 1196679 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGT 4995 |||||||| || || || ||||||||||||| Sbjct 1196678 GCAAAAAATGCTAATACGTGAGATATAAAGT 1196648 >seq1042 Length=111944 Score = 125 bits (138), Expect = 6e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 ||||||| |||||| || ||||||| || |||||||||||| ||||||||||| ||||| Sbjct 80524 GGGTCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATC 80583 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 || || || || ||||| |||||||| || |||||||||||||| | | |||||| | Sbjct 80584 ATTATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGT 80643 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 | || | ||||| | ||||| || | || || ||||| || | | | ||| Sbjct 80644 TTAACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGAT 80703 Query 4989 ATAAAGT 4995 ||||||| Sbjct 80704 ATAAAGT 80710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426925078342025