Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_031019.1
Length=41809
Score E
Sequences producing significant alignments: (Bits) Value
seq2959 282 1e-71
>seq2959
Length=4395
Score = 282 bits (312), Expect = 1e-71
Identities = 460/649 (71%), Gaps = 20/649 (3%)
Strand=Plus/Minus
Query 1646 GCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAGGTTGTTGAGAGAGGGAT 1705
|||||| ||| |||||||| ||||||||| ||| | |||| |||| ||| | | |
Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGCT 1051
Query 1706 TGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCGTCACGTATGGACGATGA 1765
||| || ||||||| |||| || | ||||| || || ||| |||||||| ||
Sbjct 1050 TGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACGA 991
Query 1766 AGGATGGGCGAGAGTTGCAAGCGGGATG--AAG-TTGCTGGCAGAGCTGGATGTGTGGGT 1822
||| ||||| | ||| | || ||| ||| ||||| | | || || || ||| |
Sbjct 990 AGGCTGGGCAAAAGTCACCGCTGGAATGGGAAGATTGCTTG---ATCTCGACGTATGGAT 934
Query 1823 AGTTGACGC-ATCGCGTTTGTCTGTCGAAGAAATCAGGTCCATTTCCGAACGCCACAAGC 1881
|| ||||| | | | | | || || | ||| | |||| ||||||| |||||||
Sbjct 933 TGTGGACGCCAGCAAGATGAAC-GTGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGC 875
Query 1882 AGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGGGCTAATTGAGAAACCAA 1941
| | || || || || || | | |||||| ||||| || ||||| || ||||
Sbjct 874 GCAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAA 815
Query 1942 AAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAGCCTGAAAGCG-ATGGCG 2000
| || || || || ||||| || || || || |||||||| |||||||| ||| |||||
Sbjct 814 AGGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAA-GCGCATGGCA 756
Query 2001 AAAGACCTGAAAACTCCAGTTATCTCCCTAAGCCAGCTCTCCCGCGATGTTGAGAAGCGG 2060
||||| || ||||| || ||||| || || || ||||| |||||||||||||| |||||
Sbjct 755 AAAGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGC 696
Query 2061 CCAAA---CAAGCGC---CCGACAAACGCAGATTTGCGGGATTCAGGAAGCATTGAACAG 2114
|| || ||||| ||||| ||||| ||| |||| || || ||||||||||| |||
Sbjct 695 CCGAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAG 636
Query 2115 GACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGACG-AGAA-CAGTAGCG 2172
||||| ||| |||||||||||||| || ||||| || ||||||| |||| | | |
Sbjct 635 GACGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA--G 578
Query 2173 CCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTCGCTTGGTACGGTTT 2232
| ||| || || ||||||||||| || |||||||| || || ||| || || || |
Sbjct 577 CTGCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCT 518
Query 2233 ACCAGCGGTTCTGCAACGGACACTTTGTTGCATGTGACCAGGACGAAGC 2281
||||| ||| ||||| || ||| || |||||||| |||||
Sbjct 517 ACCAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133629223895350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |