Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq2959 282 1e-71 >seq2959 Length=4395 Score = 282 bits (312), Expect = 1e-71 Identities = 460/649 (71%), Gaps = 20/649 (3%) Strand=Plus/Minus Query 1646 GCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAGGTTGTTGAGAGAGGGAT 1705 |||||| ||| |||||||| ||||||||| ||| | |||| |||| ||| | | | Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGCT 1051 Query 1706 TGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCGTCACGTATGGACGATGA 1765 ||| || ||||||| |||| || | ||||| || || ||| |||||||| || Sbjct 1050 TGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACGA 991 Query 1766 AGGATGGGCGAGAGTTGCAAGCGGGATG--AAG-TTGCTGGCAGAGCTGGATGTGTGGGT 1822 ||| ||||| | ||| | || ||| ||| ||||| | | || || || ||| | Sbjct 990 AGGCTGGGCAAAAGTCACCGCTGGAATGGGAAGATTGCTTG---ATCTCGACGTATGGAT 934 Query 1823 AGTTGACGC-ATCGCGTTTGTCTGTCGAAGAAATCAGGTCCATTTCCGAACGCCACAAGC 1881 || ||||| | | | | | || || | ||| | |||| ||||||| ||||||| Sbjct 933 TGTGGACGCCAGCAAGATGAAC-GTGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGC 875 Query 1882 AGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGGGCTAATTGAGAAACCAA 1941 | | || || || || || | | |||||| ||||| || ||||| || |||| Sbjct 874 GCAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAA 815 Query 1942 AAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAGCCTGAAAGCG-ATGGCG 2000 | || || || || ||||| || || || || |||||||| |||||||| ||| ||||| Sbjct 814 AGGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAA-GCGCATGGCA 756 Query 2001 AAAGACCTGAAAACTCCAGTTATCTCCCTAAGCCAGCTCTCCCGCGATGTTGAGAAGCGG 2060 ||||| || ||||| || ||||| || || || ||||| |||||||||||||| ||||| Sbjct 755 AAAGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGC 696 Query 2061 CCAAA---CAAGCGC---CCGACAAACGCAGATTTGCGGGATTCAGGAAGCATTGAACAG 2114 || || ||||| ||||| ||||| ||| |||| || || ||||||||||| ||| Sbjct 695 CCGAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAG 636 Query 2115 GACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGACG-AGAA-CAGTAGCG 2172 ||||| ||| |||||||||||||| || ||||| || ||||||| |||| | | | Sbjct 635 GACGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA--G 578 Query 2173 CCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTCGCTTGGTACGGTTT 2232 | ||| || || ||||||||||| || |||||||| || || ||| || || || | Sbjct 577 CTGCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCT 518 Query 2233 ACCAGCGGTTCTGCAACGGACACTTTGTTGCATGTGACCAGGACGAAGC 2281 ||||| ||| ||||| || ||| || |||||||| ||||| Sbjct 517 ACCAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133629223895350