Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1042 105 9e-18
seq35 105 9e-18
seq989 96.9 5e-15
seq757 95.1 2e-14
seq7356 93.3 6e-14
>seq1042
Length=111944
Score = 105 bits (116), Expect = 9e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 48390 TTTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449
||||| ||| ||||||| || ||||||||||| | ||||||||||| || || |||
Sbjct 80515 TTTTCTTTGGGGTCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATA 80574
Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509
|| || || || || || || ||||||||||| || || || | || || || |
Sbjct 80575 TTCTCTATCATTATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGA 80634
Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569
||||||||| | | | ||| ||| | ||||| |||| |||||| |||||||||| |
Sbjct 80635 GAAAATCGTTTAACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGT 80694
Query 48570 A 48570
|
Sbjct 80695 A 80695
>seq35
Length=1961283
Score = 105 bits (116), Expect = 9e-18
Identities = 127/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461
|||| || || || || ||||| | ||||||||||| || || |||||||| ||
Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772
Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521
|| || || || ||||||||||| || || || | || || || | | |||| ||||
Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712
Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATG 48574
| | ||| ||||| || || ||||| ||||||||||||||||||||| ||
Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 1196659
>seq989
Length=145162
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 77365 ATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424
|||| | ||| ||||| | ||| ||||||||||||||| ||||| || || || ||||
Sbjct 126967 ATGTCTTATACGGTCCATTTGTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATAAT 126908
Query 77425 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAAT 77484
|||| | |||| ||| | | || ||| || ||||| || ||||||| ||||| |
Sbjct 126907 AAATAGATTCGTGAATTTGTGTGTTAAGAACTCTAGCTTCTTTATTATCAAAAGGATATT 126848
Query 77485 GTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAAT 77530
| |||||| |||||||||||| || || ||||| |||||
Sbjct 126847 TCATTTTAATAAATAAATCTGCTAATCCTTGGACACCAATTCCAAT 126802
>seq757
Length=226151
Score = 95.1 bits (104), Expect = 2e-14
Identities = 100/129 (78%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228
||||||||||| | ||||||||| || || | ||||||||| || |||||||| |||||
Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815
Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTT- 77287
||||| | || || |||||| | ||| ||| | ||||| ||||||| ||||||
Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTA-ATATTTC 204756
Query 77288 CCAATCCCA 77296
||||| |||
Sbjct 204755 CCAATTCCA 204747
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/172 (72%), Gaps = 8/172 (5%)
Strand=Plus/Plus
Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422
|||||||| || ||||| | | | ||||||||||||||| ||||| || || || ||
Sbjct 190799 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 190858
Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482
|||||| |||||| ||| | | || |||| ||||| || ||||||| |||||
Sbjct 190859 ATAAATAGTTTCGTGAATTTGTATGTTAAGATACCTAGCTTCTTTATTATCAAAAGGATA 190918
Query 77483 ----ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAAT 77530
|| | || ||||| |||||||||||| || | ||||| |||||
Sbjct 190919 TCTCATTTTAATAAATAA----ATCTGCTAATCCTTGGATACCAATTCCAAT 190966
>seq7356
Length=7625
Score = 93.3 bits (102), Expect = 6e-14
Identities = 124/172 (72%), Gaps = 8/172 (5%)
Strand=Plus/Minus
Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422
|||||||| || ||||| | | | ||||||||||||||| ||||| || || || ||
Sbjct 4489 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 4430
Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482
|||||| |||||| ||| | | || |||| | ||||| || ||||||| |||||
Sbjct 4429 ATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGGATA 4370
Query 77483 ----ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAAT 77530
|| | || |||||| ||||||||||| || | ||||| |||||
Sbjct 4369 TCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 4322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694461050612000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |