Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1042 105 9e-18 seq35 105 9e-18 seq989 96.9 5e-15 seq757 95.1 2e-14 seq7356 93.3 6e-14 >seq1042 Length=111944 Score = 105 bits (116), Expect = 9e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 48390 TTTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 ||||| ||| ||||||| || ||||||||||| | ||||||||||| || || ||| Sbjct 80515 TTTTCTTTGGGGTCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATA 80574 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 || || || || || || || ||||||||||| || || || | || || || | Sbjct 80575 TTCTCTATCATTATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGA 80634 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 ||||||||| | | | ||| ||| | ||||| |||| |||||| |||||||||| | Sbjct 80635 GAAAATCGTTTAACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGT 80694 Query 48570 A 48570 | Sbjct 80695 A 80695 >seq35 Length=1961283 Score = 105 bits (116), Expect = 9e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 |||| || || || || ||||| | ||||||||||| || || |||||||| || Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 || || || || ||||||||||| || || || | || || || | | |||| |||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATG 48574 | | ||| ||||| || || ||||| ||||||||||||||||||||| || Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 1196659 >seq989 Length=145162 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77365 ATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424 |||| | ||| ||||| | ||| ||||||||||||||| ||||| || || || |||| Sbjct 126967 ATGTCTTATACGGTCCATTTGTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATAAT 126908 Query 77425 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAAT 77484 |||| | |||| ||| | | || ||| || ||||| || ||||||| ||||| | Sbjct 126907 AAATAGATTCGTGAATTTGTGTGTTAAGAACTCTAGCTTCTTTATTATCAAAAGGATATT 126848 Query 77485 GTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAAT 77530 | |||||| |||||||||||| || || ||||| ||||| Sbjct 126847 TCATTTTAATAAATAAATCTGCTAATCCTTGGACACCAATTCCAAT 126802 >seq757 Length=226151 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 ||||||||||| | ||||||||| || || | ||||||||| || |||||||| ||||| Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTT- 77287 ||||| | || || |||||| | ||| ||| | ||||| ||||||| |||||| Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTA-ATATTTC 204756 Query 77288 CCAATCCCA 77296 ||||| ||| Sbjct 204755 CCAATTCCA 204747 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/172 (72%), Gaps = 8/172 (5%) Strand=Plus/Plus Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 |||||||| || ||||| | | | ||||||||||||||| ||||| || || || || Sbjct 190799 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 190858 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 |||||| |||||| ||| | | || |||| ||||| || ||||||| ||||| Sbjct 190859 ATAAATAGTTTCGTGAATTTGTATGTTAAGATACCTAGCTTCTTTATTATCAAAAGGATA 190918 Query 77483 ----ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAAT 77530 || | || ||||| |||||||||||| || | ||||| ||||| Sbjct 190919 TCTCATTTTAATAAATAA----ATCTGCTAATCCTTGGATACCAATTCCAAT 190966 >seq7356 Length=7625 Score = 93.3 bits (102), Expect = 6e-14 Identities = 124/172 (72%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 |||||||| || ||||| | | | ||||||||||||||| ||||| || || || || Sbjct 4489 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 4430 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 |||||| |||||| ||| | | || |||| | ||||| || ||||||| ||||| Sbjct 4429 ATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGGATA 4370 Query 77483 ----ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAAT 77530 || | || |||||| ||||||||||| || | ||||| ||||| Sbjct 4369 TCTCATTTTAATAAATAAA----TCTGCTAATCCTTGGATACCAATTCCAAT 4322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694461050612000