Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq35 122 1e-22
seq1042 120 4e-22
seq757 100 4e-16
seq989 93.3 6e-14
seq7356 91.5 2e-13
seq1088 87.8 3e-12
>seq35
Length=1961283
Score = 122 bits (134), Expect = 1e-22
Identities = 133/174 (76%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950
|||| || |||||| || ||||| | ||||||||||||||||| || ||||| ||
Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772
Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010
|| || || || ||||||||||| || ||||| | || || ||| | | |||| ||||
Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712
Query 47011 GACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATG 47063
|||| ||| ||||| || || ||||| ||||||||||||||| ||||| ||
Sbjct 1196711 -ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 1196659
Score = 118 bits (130), Expect = 2e-21
Identities = 162/226 (72%), Gaps = 3/226 (1%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||| | || || ||| || | || ||||||| ||| | || ||
Sbjct 1197130 TCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTC 1197071
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
| |||||||| || || ||| |||||| || ||||| ||||| || || || |||||
Sbjct 1197070 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCA 1197011
Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCC 46830
|| | || || || || | || | | ||| | ||||| | |||||||||| |||
Sbjct 1197010 ACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCC 1196951
Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876
|| || |||||||| ||||| ||||| ||||||||||| | |||||
Sbjct 1196950 TTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905
>seq1042
Length=111944
Score = 120 bits (132), Expect = 4e-22
Identities = 127/165 (77%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950
||||||| ||||||||||||||| | ||||||||||||||||| || || || ||
Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586
Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010
|| || || || ||||||||||| || ||||| | || || ||| | ||||||||| |
Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646
Query 47011 GACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGC 47054
|||| ||| ||| | ||||| |||| |||||| ||||||||
Sbjct 80647 -ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGC 80690
>seq757
Length=226151
Score = 100 bits (110), Expect = 4e-16
Identities = 101/129 (78%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823
||||||||||| | ||||||||| || || | ||||||||| ||||||||||| |||||
Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815
Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTT- 75882
||||| | || || |||||| | ||| ||| | ||||| ||||||| ||||||
Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTA-ATATTTC 204756
Query 75883 CCAATCCCA 75891
||||| |||
Sbjct 204755 CCAATTCCA 204747
Score = 87.8 bits (96), Expect = 3e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017
|||||||| ||| | || | || ||||||||| ||||| || ||||| ||||| ||
Sbjct 190799 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 190858
Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077
|||||| |||||| ||| | | ||||||| ||||| | |||||||||||||
Sbjct 190859 ATAAATAGTTTCGTGAATTTGTATGTTAAGATACCTAGCTTCTTTATTATCAAAAGGATA 190918
Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAAT 76125
| ||||||| |||||||| ||| || | ||||| |||||
Sbjct 190919 TCTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAAT 190966
Score = 86.0 bits (94), Expect = 9e-12
Identities = 130/184 (71%), Gaps = 1/184 (1%)
Strand=Plus/Minus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||||||||||||||| | || || ||| | | | || | | || |||||||
Sbjct 205329 TCCATCCGTAGAAATGTACAGATGATATTTTACTAATAGTTGGTTGCTCAATGTGAATAT 205270
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
| | |||||| |||||| ||| | ||||||| ||| || ||||| | || || | |
Sbjct 205269 TTAATGACTGAGATTGATCAATGTATGCTCCTCGATCTGCAGCCATATCTAATATTATTT 205210
Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA-TTTGTA 75622
|||||| | ||||||| | ||||| | | || ||| |||| ||||||| | ||| ||
Sbjct 205209 TTTGAGATAGTTCCCAATTTGTTTTATATAATTCTTTAATATTGTCTGGAATACTTTTTA 205150
Query 75623 TTTT 75626
||||
Sbjct 205149 TTTT 205146
>seq989
Length=145162
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 75985 AGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT 76044
||||||||| ||||| || ||||| ||||| |||||||| | |||| ||| | | ||
Sbjct 126942 AGCTAGTTCACAACTTGCTTCTAAAGCACCATAATAAATAGATTCGTGAATTTGTGTGTT 126883
Query 76045 AAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAG 76104
|||| || ||||| | ||||||||||||| | | ||||||| ||||||||
Sbjct 126882 AAGAACTCTAGCTTCTTTATTATCAAAAGGATATTTCATTTTAATAAATAAATCTGCTAA 126823
Query 76105 TCCCTGAACTCCAATACCAAT 76125
||| || || ||||| |||||
Sbjct 126822 TCCTTGGACACCAATTCCAAT 126802
>seq7356
Length=7625
Score = 91.5 bits (100), Expect = 2e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017
|||||||| ||| | || | || ||||||||| ||||| || ||||| ||||| ||
Sbjct 4489 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 4430
Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077
|||||| |||||| ||| | | ||||||| | ||||| | |||||||||||||
Sbjct 4429 ATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGGATA 4370
Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAAT 76125
| ||||||| |||||||| ||| || | ||||| |||||
Sbjct 4369 TCTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAAT 4322
>seq1088
Length=178471
Score = 87.8 bits (96), Expect = 3e-12
Identities = 81/100 (81%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 170330 AATTAAAGATGATTAAAATAAGTAAGGATCCCaaaaaaaTTCCAGAGTGGTTAGTAGTTA 170389
||||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||| | |
Sbjct 145422 AATTAAAAATGATCAAAATTAGTAAAGATCCAGAAAAAGTTCCAGAGTGGTTAAAATGCA 145363
Query 170390 ATAAAA-TATATATTCCCGATTTTGTAGTAGAGGATCCTA 170428
||||| ||| ||||| |||||||||| ||| |||||||
Sbjct 145362 CTAAAACTAT-GATTCCGGATTTTGTAGCAGAAGATCCTA 145324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712721188056000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |