Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq35 122 1e-22 seq1042 120 4e-22 seq757 100 4e-16 seq989 93.3 6e-14 seq7356 91.5 2e-13 seq1088 87.8 3e-12 >seq35 Length=1961283 Score = 122 bits (134), Expect = 1e-22 Identities = 133/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 |||| || |||||| || ||||| | ||||||||||||||||| || ||||| || Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 || || || || ||||||||||| || ||||| | || || ||| | | |||| |||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712 Query 47011 GACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATG 47063 |||| ||| ||||| || || ||||| ||||||||||||||| ||||| || Sbjct 1196711 -ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTG 1196659 Score = 118 bits (130), Expect = 2e-21 Identities = 162/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||| | || || ||| || | || ||||||| ||| | || || Sbjct 1197130 TCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTC 1197071 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | |||||||| || || ||| |||||| || ||||| ||||| || || || ||||| Sbjct 1197070 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCA 1197011 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCC 46830 || | || || || || | || | | ||| | ||||| | |||||||||| ||| Sbjct 1197010 ACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCC 1196951 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 || || |||||||| ||||| ||||| ||||||||||| | ||||| Sbjct 1196950 TTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905 >seq1042 Length=111944 Score = 120 bits (132), Expect = 4e-22 Identities = 127/165 (77%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||||| ||||||||||||||| | ||||||||||||||||| || || || || Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 || || || || ||||||||||| || ||||| | || || ||| | ||||||||| | Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646 Query 47011 GACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGC 47054 |||| ||| ||| | ||||| |||| |||||| |||||||| Sbjct 80647 -ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGC 80690 >seq757 Length=226151 Score = 100 bits (110), Expect = 4e-16 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823 ||||||||||| | ||||||||| || || | ||||||||| ||||||||||| ||||| Sbjct 204874 GTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGAAGCAGTAGGCATT 204815 Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTT- 75882 ||||| | || || |||||| | ||| ||| | ||||| ||||||| |||||| Sbjct 204814 GGTGCTAATAACAATGAATTTCTAACACCGTGTTTAGCAATTTTTTCTTTTA-ATATTTC 204756 Query 75883 CCAATCCCA 75891 ||||| ||| Sbjct 204755 CCAATTCCA 204747 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 |||||||| ||| | || | || ||||||||| ||||| || ||||| ||||| || Sbjct 190799 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 190858 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 |||||| |||||| ||| | | ||||||| ||||| | ||||||||||||| Sbjct 190859 ATAAATAGTTTCGTGAATTTGTATGTTAAGATACCTAGCTTCTTTATTATCAAAAGGATA 190918 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAAT 76125 | ||||||| |||||||| ||| || | ||||| ||||| Sbjct 190919 TCTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAAT 190966 Score = 86.0 bits (94), Expect = 9e-12 Identities = 130/184 (71%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||||||||||||||| | || || ||| | | | || | | || ||||||| Sbjct 205329 TCCATCCGTAGAAATGTACAGATGATATTTTACTAATAGTTGGTTGCTCAATGTGAATAT 205270 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | |||||| |||||| ||| | ||||||| ||| || ||||| | || || | | Sbjct 205269 TTAATGACTGAGATTGATCAATGTATGCTCCTCGATCTGCAGCCATATCTAATATTATTT 205210 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA-TTTGTA 75622 |||||| | ||||||| | ||||| | | || ||| |||| ||||||| | ||| || Sbjct 205209 TTTGAGATAGTTCCCAATTTGTTTTATATAATTCTTTAATATTGTCTGGAATACTTTTTA 205150 Query 75623 TTTT 75626 |||| Sbjct 205149 TTTT 205146 >seq989 Length=145162 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 75985 AGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT 76044 ||||||||| ||||| || ||||| ||||| |||||||| | |||| ||| | | || Sbjct 126942 AGCTAGTTCACAACTTGCTTCTAAAGCACCATAATAAATAGATTCGTGAATTTGTGTGTT 126883 Query 76045 AAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAG 76104 |||| || ||||| | ||||||||||||| | | ||||||| |||||||| Sbjct 126882 AAGAACTCTAGCTTCTTTATTATCAAAAGGATATTTCATTTTAATAAATAAATCTGCTAA 126823 Query 76105 TCCCTGAACTCCAATACCAAT 76125 ||| || || ||||| ||||| Sbjct 126822 TCCTTGGACACCAATTCCAAT 126802 >seq7356 Length=7625 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 |||||||| ||| | || | || ||||||||| ||||| || ||||| ||||| || Sbjct 4489 ATATGTTTTGTACGGTCCATTTTTAGAAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 4430 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 |||||| |||||| ||| | | ||||||| | ||||| | ||||||||||||| Sbjct 4429 ATAAATAGTTTCGTGAATTTGTATGTTAAGATATCTAGCTTCTTTATTATCAAAAGGATA 4370 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAAT 76125 | ||||||| |||||||| ||| || | ||||| ||||| Sbjct 4369 TCTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCAATTCCAAT 4322 >seq1088 Length=178471 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 170330 AATTAAAGATGATTAAAATAAGTAAGGATCCCaaaaaaaTTCCAGAGTGGTTAGTAGTTA 170389 ||||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||| | | Sbjct 145422 AATTAAAAATGATCAAAATTAGTAAAGATCCAGAAAAAGTTCCAGAGTGGTTAAAATGCA 145363 Query 170390 ATAAAA-TATATATTCCCGATTTTGTAGTAGAGGATCCTA 170428 ||||| ||| ||||| |||||||||| ||| ||||||| Sbjct 145362 CTAAAACTAT-GATTCCGGATTTTGTAGCAGAAGATCCTA 145324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712721188056000