Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq4044 280 1e-70 >seq4044 Length=43136 Score = 280 bits (310), Expect = 1e-70 Identities = 580/853 (68%), Gaps = 15/853 (2%) Strand=Plus/Plus Query 5632 ATTTTCATCTCTAATCTTAAAGGCGGTGTGTCAAAAACTGTATCGACGGTTTCTCTGGCG 5691 ||||| | | |||||||||||| |||| || || || || || || | ||| | | Sbjct 42292 ATTTTTGTATGTAATCTTAAAGGTGGTGGTTCTAAGACAGTTTCTACCGCTTCATTATCA 42351 Query 5692 CATGCAATGCGTGCTCACCCTCATCTTCTGATGGAAGATTTAAGGATTCTGGTTATTGAC 5751 ||||| | || ||||| ||||| |||||| | |||||| | | ||||||| || || Sbjct 42352 CATGCTTTTCGGGCTCATCCTCAGCTTCTGTTCGAAGATCTGCGTATTCTGGCCATCGAT 42411 Query 5752 CTTGATCCGCAATCTTCAGCAACGATGTTTTTAAGCCATAAACACTCTATTGGTATCGTA 5811 | ||||| || | || || ||||| | | | ||| | | || | ||| | || Sbjct 42412 TTCGATCCTCAGGCATCTCTGACAATGTTCTGA-GTCATGAGAATTCAGTGGGTTTGGTT 42470 Query 5812 AACGCAACATCTGCACAGGCTATGTTGCAGAATGTAAGCCGTGAAGAGCTGTTAGAGGAG 5871 | || |||| ||||| ||| | ||||| || |||||||| | | || Sbjct 42471 GAAAATACGGCTGCTCAGGCCATGCTCCAGAACGTGTCTCGTGAAGAATTACTTTCCGAT 42530 Query 5872 TTTATTGTTCCTTCTGTTGTACCTGGGGTTGACGTTATGCCTGCGTCGATTGACGATGCC 5931 ||||| || || || || | || || ||||| || || || || || ||||||||||| Sbjct 42531 TTTATCGTGCCGTCAATTATCCCGGGCGTTGATGTAATTCCCGCTTCTATTGACGATGCA 42590 Query 5932 TTTATTGCATCCGATTGGAGAGAGCTGTGCAATGAGCATCTACCGGGTCAGAACATCCAT 5991 || |||| | |||| | ||||| | || ||||| || || | || || ||| Sbjct 42591 TTCCTTGCTGAAGGCTGGAAGGGATTGTGCGAAGAACATCTGCCAGGGAAAAATATTCAT 42650 Query 5992 GCAGTCCTGAAAGAAAATGTGATTGATAAGCTGAAGAGCGATTATGACTTTATCCTCGTT 6051 || || || ||||| || | || || ||||| || || || |||||||| || || Sbjct 42651 GCGGTGCTTAAAGAGAACATTATCGAGAAGCTCCAGTATGACTACGACTTTATTTTCCTT 42710 Query 6052 GATAGTGGTCCTCACCTTGACGCCTTCCTGAAAAA-TGCTTTGGCCTCGGCCAATATACT 6110 |||||||| ||||| ||||| || ||||||||||| ||| |||| |||| | | | Sbjct 42711 GATAGTGGCCCTCATCTTGATGCGTTCCTGAAAAACTGCATTGG-GGCGGCAGACCTGAT 42769 Query 6111 GTTTACACCTCTGCCGCCTGCAACGGTTGATTTCCACTCATCGCTTAAATACGTTGCCCG 6170 ||| || ||||| || || || ||||||||||| || || || || || | || ||| | Sbjct 42770 GTTGACCCCTCTTCCACCGGCGACGGTTGATTTTCATTCTTCCCTGAAGTTTGTGGCCAG 42829 Query 6171 CCTTCCTGAGTTGGTGAAACTCATTTCGGATGAAGGCTGCGAGTGTCAGC--TTGCAAC- 6227 ||| |||| | | | | | ||| | | | || | | | || | || | Sbjct 42830 CCTCCCTGCCCTCATTGA--TTCTATCGAA--ATAGATGGGCATACCTGCAATCTCATCG 42885 Query 6228 -TAACATTGGTTTTATGTCCAAGTTGAGTAACAAGGCAGACCATAAGTATTGCCATAGCC 6286 ||| | ||||| |||||||| | ||||| | || || || ||||||||| | Sbjct 42886 GTAATGTCGGTTTCATGTCCAAAATCCTGAACAAATCTGATCACAAAATTTGCCATAGTC 42945 Query 6287 TGGCTAAAGAAGTGTTCGGTGGGGATATGCTTGATGTTGTCCTCCCTCGCCTTGACGGTT 6346 ||| ||||| || ||||||| |||||||| || | || || || | ||||| |||| Sbjct 42946 AGGCCAAAGAGGTTTTCGGTGCAGATATGCTCGACATGGTTCTGCCGAGGCTTGATGGTT 43005 Query 6347 TTGAACGCTGCGGCGAGTCTTTTGACACTGTTATTTCAGCTAACCCGGCAACGTATGTTG 6406 | |||||||| || ||| |||||||||| ||||||||||| || || ||||| |||| || Sbjct 43006 TCGAACGCTGTGGGGAGACTTTTGACACAGTTATTTCAGCAAATCCAGCAACCTATGATG 43065 Query 6407 GTAGTGCTGATGCATTGAAGAACGCGCGAATT--GCTGCGGAAGATTTTGCTAAAGCAGT 6464 | || |||| || | | || |||| || | || || ||||| ||||| || ||||| Sbjct 43066 GAAGCTCTGAGGCGCTTA--AAAGCGCAAAATCAGCAGCTGAAGACTTTGCAAAGGCAGT 43123 Query 6465 TTTTGACCGTATT 6477 ||||| || ||| Sbjct 43124 ATTTGATCGCATT 43136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330802714446550