Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_031129.1
Length=103445
Score E
Sequences producing significant alignments: (Bits) Value
seq4044 280 1e-70
>seq4044
Length=43136
Score = 280 bits (310), Expect = 1e-70
Identities = 580/853 (68%), Gaps = 15/853 (2%)
Strand=Plus/Plus
Query 5632 ATTTTCATCTCTAATCTTAAAGGCGGTGTGTCAAAAACTGTATCGACGGTTTCTCTGGCG 5691
||||| | | |||||||||||| |||| || || || || || || | ||| | |
Sbjct 42292 ATTTTTGTATGTAATCTTAAAGGTGGTGGTTCTAAGACAGTTTCTACCGCTTCATTATCA 42351
Query 5692 CATGCAATGCGTGCTCACCCTCATCTTCTGATGGAAGATTTAAGGATTCTGGTTATTGAC 5751
||||| | || ||||| ||||| |||||| | |||||| | | ||||||| || ||
Sbjct 42352 CATGCTTTTCGGGCTCATCCTCAGCTTCTGTTCGAAGATCTGCGTATTCTGGCCATCGAT 42411
Query 5752 CTTGATCCGCAATCTTCAGCAACGATGTTTTTAAGCCATAAACACTCTATTGGTATCGTA 5811
| ||||| || | || || ||||| | | | ||| | | || | ||| | ||
Sbjct 42412 TTCGATCCTCAGGCATCTCTGACAATGTTCTGA-GTCATGAGAATTCAGTGGGTTTGGTT 42470
Query 5812 AACGCAACATCTGCACAGGCTATGTTGCAGAATGTAAGCCGTGAAGAGCTGTTAGAGGAG 5871
| || |||| ||||| ||| | ||||| || |||||||| | | ||
Sbjct 42471 GAAAATACGGCTGCTCAGGCCATGCTCCAGAACGTGTCTCGTGAAGAATTACTTTCCGAT 42530
Query 5872 TTTATTGTTCCTTCTGTTGTACCTGGGGTTGACGTTATGCCTGCGTCGATTGACGATGCC 5931
||||| || || || || | || || ||||| || || || || || |||||||||||
Sbjct 42531 TTTATCGTGCCGTCAATTATCCCGGGCGTTGATGTAATTCCCGCTTCTATTGACGATGCA 42590
Query 5932 TTTATTGCATCCGATTGGAGAGAGCTGTGCAATGAGCATCTACCGGGTCAGAACATCCAT 5991
|| |||| | |||| | ||||| | || ||||| || || | || || |||
Sbjct 42591 TTCCTTGCTGAAGGCTGGAAGGGATTGTGCGAAGAACATCTGCCAGGGAAAAATATTCAT 42650
Query 5992 GCAGTCCTGAAAGAAAATGTGATTGATAAGCTGAAGAGCGATTATGACTTTATCCTCGTT 6051
|| || || ||||| || | || || ||||| || || || |||||||| || ||
Sbjct 42651 GCGGTGCTTAAAGAGAACATTATCGAGAAGCTCCAGTATGACTACGACTTTATTTTCCTT 42710
Query 6052 GATAGTGGTCCTCACCTTGACGCCTTCCTGAAAAA-TGCTTTGGCCTCGGCCAATATACT 6110
|||||||| ||||| ||||| || ||||||||||| ||| |||| |||| | | |
Sbjct 42711 GATAGTGGCCCTCATCTTGATGCGTTCCTGAAAAACTGCATTGG-GGCGGCAGACCTGAT 42769
Query 6111 GTTTACACCTCTGCCGCCTGCAACGGTTGATTTCCACTCATCGCTTAAATACGTTGCCCG 6170
||| || ||||| || || || ||||||||||| || || || || || | || ||| |
Sbjct 42770 GTTGACCCCTCTTCCACCGGCGACGGTTGATTTTCATTCTTCCCTGAAGTTTGTGGCCAG 42829
Query 6171 CCTTCCTGAGTTGGTGAAACTCATTTCGGATGAAGGCTGCGAGTGTCAGC--TTGCAAC- 6227
||| |||| | | | | | ||| | | | || | | | || | || |
Sbjct 42830 CCTCCCTGCCCTCATTGA--TTCTATCGAA--ATAGATGGGCATACCTGCAATCTCATCG 42885
Query 6228 -TAACATTGGTTTTATGTCCAAGTTGAGTAACAAGGCAGACCATAAGTATTGCCATAGCC 6286
||| | ||||| |||||||| | ||||| | || || || ||||||||| |
Sbjct 42886 GTAATGTCGGTTTCATGTCCAAAATCCTGAACAAATCTGATCACAAAATTTGCCATAGTC 42945
Query 6287 TGGCTAAAGAAGTGTTCGGTGGGGATATGCTTGATGTTGTCCTCCCTCGCCTTGACGGTT 6346
||| ||||| || ||||||| |||||||| || | || || || | ||||| ||||
Sbjct 42946 AGGCCAAAGAGGTTTTCGGTGCAGATATGCTCGACATGGTTCTGCCGAGGCTTGATGGTT 43005
Query 6347 TTGAACGCTGCGGCGAGTCTTTTGACACTGTTATTTCAGCTAACCCGGCAACGTATGTTG 6406
| |||||||| || ||| |||||||||| ||||||||||| || || ||||| |||| ||
Sbjct 43006 TCGAACGCTGTGGGGAGACTTTTGACACAGTTATTTCAGCAAATCCAGCAACCTATGATG 43065
Query 6407 GTAGTGCTGATGCATTGAAGAACGCGCGAATT--GCTGCGGAAGATTTTGCTAAAGCAGT 6464
| || |||| || | | || |||| || | || || ||||| ||||| || |||||
Sbjct 43066 GAAGCTCTGAGGCGCTTA--AAAGCGCAAAATCAGCAGCTGAAGACTTTGCAAAGGCAGT 43123
Query 6465 TTTTGACCGTATT 6477
||||| || |||
Sbjct 43124 ATTTGATCGCATT 43136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330802714446550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |