Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq276 105 2e-17 seq231 96.9 8e-15 seq2302 91.5 3e-13 >seq276 Length=376631 Score = 105 bits (116), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 ||||| || || ||||| || || || || |||| |||||| | |||||||| | || Sbjct 241626 TGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCCAATTGC 241567 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| ||||| || || | | ||| || || | | ||| ||||| || |||||||||| Sbjct 241566 TTT--CCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTT 241509 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | ||| ||| | || | ||||||| |||||||| | ||| || |||||||| | Sbjct 241508 TAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAG 241449 Query 152080 TGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| |||| |||||| Sbjct 241448 TAAGGGTTTTCACAAAGATTTGCATT 241423 Score = 100 bits (110), Expect = 7e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 ||||| || || ||||| || || || || |||| ||| || | |||||||| | || Sbjct 240714 TGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGC 240655 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| ||||| || || | | ||| || || | | ||||||||| || |||||||||| Sbjct 240654 TTT--CCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTT 240597 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | ||| ||| | || | |||||| |||||||| | ||| || ||||| || | Sbjct 240596 TAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTTCCAG 240537 Query 152080 TGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| ||||| |||| ||||| || Sbjct 240536 TAAGAGTTTTCACAAAGATTTGCATCTT 240509 Score = 100 bits (110), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 ||||| || || ||||| || || || || |||| ||| || | |||||||| | || Sbjct 240942 TGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGC 240883 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| ||||| || || | | ||| || || | | ||||||||| || |||||||||| Sbjct 240882 TTT--CCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTT 240825 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | ||| ||| | || | |||||| |||||||| | ||| || |||||||| | Sbjct 240824 TAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAG 240765 Query 152080 TGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| |||| |||||| Sbjct 240764 TAAGGGTTTTCACAAAGATTTGCATT 240739 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 ||||| || || ||||| || || || || |||| ||| || | |||||||| | || Sbjct 241398 TGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGC 241339 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| ||||| || || | | ||| || || | | ||| ||||| || |||||||||| Sbjct 241338 TTT--CCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTT 241281 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | ||| ||| | || | |||||| |||||||| | ||| || |||||||| | Sbjct 241280 TAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAG 241221 Query 152080 TGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| |||| |||||| Sbjct 241220 TAAGGGTTTTCACAAAGATTTGCATT 241195 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 ||||| || || ||||| || || || || || | ||| || | |||||||| | || Sbjct 241170 TGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCCAATTGC 241111 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| ||||| || || | | ||| || || | | ||||||||| || |||||||||| Sbjct 241110 TTT--CCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTT 241053 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | ||| ||| | || | ||||| |||||||| | ||| || |||||||| | Sbjct 241052 TCGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAG 240993 Query 152080 TGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| |||| |||||| Sbjct 240992 TAAGGGTTTTCACAAAGATTTGCATT 240967 >seq231 Length=580210 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 ||||||||||| ||||| | || || | |||||||| || || ||||||||||| Sbjct 340831 TTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 340890 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | || || || | | ||| ||||| || ||||| ||||| ||||||| | || Sbjct 340891 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCG 340950 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||||| ||| || ||||| || || || || || || || || |||||||| Sbjct 340951 ATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAA 341010 Query 152097 ACCTGCATTTT 152107 | ||||| || Sbjct 341011 ATTTGCATGTT 341021 >seq2302 Length=121279 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 ||||| ||||| ||||| ||||||||||| || | | || | || ||||| || || Sbjct 54356 TGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTCTTCAAGTTGC 54415 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| ||||| ||||| | | || ||||| | | || ||||| || ||||| || | Sbjct 54416 TTT--CCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTGGATCT 54473 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | ||| ||| | || | | ||||| ||| ||||| | ||| |||||||| || | Sbjct 54474 TAGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGTTTTACCAG 54533 Query 152080 TGAGAGTCTTCACGAAGACCTGCATTTT 152107 | | ||| || || |||| |||||| || Sbjct 54534 TCAAAGTTTTGACAAAGATCTGCATGTT 54561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153467108853675