Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq276 118 9e-22 seq2302 91.5 1e-13 >seq276 Length=376631 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| | || ||||||||||| || ||||| ||| | Sbjct 241423 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 241482 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATC 111217 || ||| ||| | || ||| |||||| ||||||||||| | |||| | |||| Sbjct 241483 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGG-GATCCCACCAGATC 241541 Query 111218 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111277 |||| | | |||| ||| || || |||||||||||| ||| | |||| |||| Sbjct 241542 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATA 241601 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| || |||||||| ||||| || ||||| | ||||| || ||||| Sbjct 241602 ATATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGG 241650 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| | || ||||||||||| || ||||| ||| | Sbjct 241195 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241254 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATC 111217 || ||| ||| | || ||| |||||| ||||||||||| | |||| | |||| Sbjct 241255 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGG-GATCCCACCAGATC 241313 Query 111218 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111277 |||| | | |||| ||| || || |||||||||||| || | |||| |||| Sbjct 241314 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATA 241373 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| || |||||||| ||||| || ||||| | ||||| || ||||| Sbjct 241374 ATATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGG 241422 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| | || ||||||||||| || ||||| ||| | Sbjct 240739 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 240798 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || ||| ||| | || ||| |||||| ||||||||||| | || ||||| Sbjct 240799 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 240858 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | | |||| ||| || || |||||||||||| || | |||| ||||| Sbjct 240859 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAA 240918 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || |||||||| ||||| || ||||| | ||||| || ||||| Sbjct 240919 TATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGG 240966 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| | || ||||||||||| || ||||| ||| | Sbjct 240967 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241026 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 |||||| ||| | || ||| |||||| ||||||||||| | || ||||| Sbjct 241027 AGATTCTATTGAAAATGTGAAAGCGAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 241086 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | | |||| ||| || || |||||||||||| || | | || ||||| Sbjct 241087 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCTGACTATAA 241146 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || |||||||| ||||| || ||||| | ||||| || ||||| Sbjct 241147 TATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGG 241194 Score = 105 bits (116), Expect = 6e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 111091 AGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACG 111150 ||| | || |||||||| ||||| ||||| | || || |||||||| || ||||| Sbjct 240503 AGTCTCAAGATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTTGGAAGTA 240562 Query 111151 GAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCC 111210 ||| | || ||| ||| | || ||| |||||| ||||||||||| | || Sbjct 240563 GAATCATCAGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCA 240622 Query 111211 GTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCC 111270 |||||||| | | |||| ||| || || |||||||||||| || | || Sbjct 240623 CCAGATCAACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCC 240682 Query 111271 GATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || |||||||| || |||||||| ||||| || ||||| | ||||| || ||||| Sbjct 240683 GACTATAATATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGG 240738 >seq2302 Length=121279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 111091 AGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACG 111150 || || || ||||| || ||||||||||| ||||| || ||||| || || ||||| Sbjct 54567 AGATTCAACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTT 54508 Query 111151 GAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCC 111210 || | ||||| ||| | |||||| || || ||||||||||| |||| Sbjct 54507 GAGTCATCAGATTCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCA 54448 Query 111211 GTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGG 111268 || |||||| | | || | ||| || || ||| | ||||| | | ||| | Sbjct 54447 CCTGACCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTT-- 54390 Query 111269 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || || || || || ||||||||||| || || |||||||||||||| || ||||| Sbjct 54389 CTGACTACAACATCCAGAAAGAATCTACCCTTCACTTAGTGTTGCGTCTCCGTGGTGG 54332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421688205785800