Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq276 118 9e-22
seq2302 91.5 1e-13
>seq276
Length=376631
Score = 118 bits (130), Expect = 9e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||| ||||| ||||| | || ||||||||||| || ||||| ||| |
Sbjct 241423 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 241482
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATC 111217
|| ||| ||| | || ||| |||||| ||||||||||| | |||| | ||||
Sbjct 241483 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGG-GATCCCACCAGATC 241541
Query 111218 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111277
|||| | | |||| ||| || || |||||||||||| ||| | |||| ||||
Sbjct 241542 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATA 241601
Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|||| || |||||||| ||||| || ||||| | ||||| || |||||
Sbjct 241602 ATATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGG 241650
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||| ||||| ||||| | || ||||||||||| || ||||| ||| |
Sbjct 241195 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241254
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATC 111217
|| ||| ||| | || ||| |||||| ||||||||||| | |||| | ||||
Sbjct 241255 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGG-GATCCCACCAGATC 241313
Query 111218 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111277
|||| | | |||| ||| || || |||||||||||| || | |||| ||||
Sbjct 241314 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATA 241373
Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|||| || |||||||| ||||| || ||||| | ||||| || |||||
Sbjct 241374 ATATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGG 241422
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||| ||||| ||||| | || ||||||||||| || ||||| ||| |
Sbjct 240739 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 240798
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
|| ||| ||| | || ||| |||||| ||||||||||| | || |||||
Sbjct 240799 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 240858
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
||| | | |||| ||| || || |||||||||||| || | |||| |||||
Sbjct 240859 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAA 240918
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
||| || |||||||| ||||| || ||||| | ||||| || |||||
Sbjct 240919 TATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGG 240966
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||| ||||| ||||| | || ||||||||||| || ||||| ||| |
Sbjct 240967 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241026
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
|||||| ||| | || ||| |||||| ||||||||||| | || |||||
Sbjct 241027 AGATTCTATTGAAAATGTGAAAGCGAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 241086
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
||| | | |||| ||| || || |||||||||||| || | | || |||||
Sbjct 241087 ACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCTGACTATAA 241146
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
||| || |||||||| ||||| || ||||| | ||||| || |||||
Sbjct 241147 TATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGG 241194
Score = 105 bits (116), Expect = 6e-18
Identities = 165/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 111091 AGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACG 111150
||| | || |||||||| ||||| ||||| | || || |||||||| || |||||
Sbjct 240503 AGTCTCAAGATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTTGGAAGTA 240562
Query 111151 GAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCC 111210
||| | || ||| ||| | || ||| |||||| ||||||||||| | ||
Sbjct 240563 GAATCATCAGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCA 240622
Query 111211 GTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCC 111270
|||||||| | | |||| ||| || || |||||||||||| || | ||
Sbjct 240623 CCAGATCAACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCC 240682
Query 111271 GATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| |||||||| || |||||||| ||||| || ||||| | ||||| || |||||
Sbjct 240683 GACTATAATATTCAGAAAGAATCAACACTTCACTTAGTACTCCGTCTTCGAGGTGG 240738
>seq2302
Length=121279
Score = 91.5 bits (100), Expect = 1e-13
Identities = 164/238 (69%), Gaps = 4/238 (2%)
Strand=Plus/Minus
Query 111091 AGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACG 111150
|| || || ||||| || ||||||||||| ||||| || ||||| || || |||||
Sbjct 54567 AGATTCAACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTT 54508
Query 111151 GAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCC 111210
|| | ||||| ||| | |||||| || || ||||||||||| ||||
Sbjct 54507 GAGTCATCAGATTCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCA 54448
Query 111211 GTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGG 111268
|| |||||| | | || | ||| || || ||| | ||||| | | ||| |
Sbjct 54447 CCTGACCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTT-- 54390
Query 111269 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
| || || || || || ||||||||||| || || |||||||||||||| || |||||
Sbjct 54389 CTGACTACAACATCCAGAAAGAATCTACCCTTCACTTAGTGTTGCGTCTCCGTGGTGG 54332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421688205785800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |