Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq1617 95.1 4e-15 >seq1617 Length=11810 Score = 95.1 bits (104), Expect = 4e-15 Identities = 177/256 (69%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 28946 GACATGGAGTCTGACGTGGGTTTTCACGCTGGCGGAGGAGCGTGCATTTATCCAGTGGTT 29005 ||||||| ||| || ||| | |||||||||||| ||||||| || || |||||| | Sbjct 1415 GACATGGTCTCTCACATGGATATTCACGCTGGCGCAGGAGCGGGC-TTCCAACAGTGGCT 1357 Query 29006 GCGTAGTCCTAACTACCTCAACAAATGCAACAACTGGTTCACCATGATGATTGATCTCGG 29065 ||| || ||||||||||| || | |||||||| ||||| | | || | || Sbjct 1356 GCGCAGCCCTAACTACCTTAATCGCGGACTGAACTGGTTTCGCATGAGGGTGGACATAGG 1297 Query 29066 AGGCAGC-GGCTTACAGGAGCAGACGCTGCATTTTACCGATTATCCGGTGCAGACCAGTA 29124 || ||| || ||| |||| ||| ||||| || | ||||| |||||||| | Sbjct 1296 -GGGAGCTGGTCCTCAGTTGCAGGAGCTCCATTTCACTCAGATGCCGGTACAGACCAGCA 1238 Query 29125 TTGATGGTGGCGTGGTCACGTGGACTGGCAATGTTATCGCCAAGAAACTCAATAACACTA 29184 | || || ||||| || || ||||| || | || ||||| || | || ||||| | Sbjct 1237 TAGACGGCGGCGTTGTTACCTGGACGGGTACCGTCATCGCGAACAGGCTAAATAATGCCG 1178 Query 29185 TGGATGAGTTTGATGA 29200 ||||| |||||||| Sbjct 1177 ATGATGATTTTGATGA 1162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152039991737100