Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq2959 288 3e-73 >seq2959 Length=4395 Score = 288 bits (318), Expect = 3e-73 Identities = 461/649 (71%), Gaps = 20/649 (3%) Strand=Plus/Minus Query 34711 GCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAGGTTGTTGAGAGAGGGAT 34770 |||||| ||| |||||||| ||||||||| ||| | |||| |||| ||| | | | Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGCT 1051 Query 34771 TGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCGTCACGTATGGACGATGA 34830 ||| || ||||||| |||| || | ||||| || || ||| |||||||| || Sbjct 1050 TGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACGA 991 Query 34831 AGGATGGGCGAGAGTTGCAAGCGGGATG--AAG-TTGCTGGCAGATCTGGATGTGTGGGT 34887 ||| ||||| | ||| | || ||| ||| ||||| | |||| || || ||| | Sbjct 990 AGGCTGGGCAAAAGTCACCGCTGGAATGGGAAGATTGCTTG---ATCTCGACGTATGGAT 934 Query 34888 AGTTGACGC-ATCGCGTTTATCTGTCGAAGAAATCAGGTCCATTTCCGAACGCCACAAGC 34946 || ||||| | | | | | | || || | ||| | |||| ||||||| ||||||| Sbjct 933 TGTGGACGCCAGCAAGATGAAC-GTGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGC 875 Query 34947 AGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGGGCTAATTGAGAAACCAA 35006 | | || || || || || | | |||||| ||||| || ||||| || |||| Sbjct 874 GCAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAA 815 Query 35007 AAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAGCCTGAAAGCG-ATGGCG 35065 | || || || || ||||| || || || || |||||||| |||||||| ||| ||||| Sbjct 814 AGGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAA-GCGCATGGCA 756 Query 35066 AAAGACCTGAAAACTCCAGTTATCTCATTAAGCCAGCTCTCCCGCGATGTTGAGAAGCGG 35125 ||||| || ||||| || ||||| || | || ||||| |||||||||||||| ||||| Sbjct 755 AAAGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGC 696 Query 35126 CCAAA---CAAGCGC---CCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAG 35179 || || ||||| ||||| ||||| ||| |||| || || ||||||||||| ||| Sbjct 695 CCGAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAG 636 Query 35180 GACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGACG-AGAA-CAGTAGCG 35237 ||||| ||| |||||||||||||| || ||||| || ||||||| |||| | | | Sbjct 635 GACGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA--G 578 Query 35238 CCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTCGCTTGGTACGGTTT 35297 | ||| || || ||||||||||| || |||||||| || || ||| || || || | Sbjct 577 CTGCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCT 518 Query 35298 ACCAGCGGTTCTGCAACGGACACTTTGTTGCATGTGACCAGGACGAAGC 35346 ||||| ||| ||||| || ||| || |||||||| ||||| Sbjct 517 ACCAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129259265794250