Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq35 145 8e-30 seq1042 129 6e-25 >seq35 Length=1961283 Score = 145 bits (160), Expect = 8e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 |||||||| ||||||| ||| ||||||||||| ||||| |||||||| || || || Sbjct 1196825 ATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATTATTTGG 1196766 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAA 23898 |||||||||||||||||||| |||| | |||||| || | | | ||||||| | | | | Sbjct 1196765 AACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCAACAAGA 1196706 Query 23899 TTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGT 23958 ||||| || ||||| ||||| ||||||||| || || | || | |||||| || Sbjct 1196705 TTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATAAAGTGA 1196646 Query 23959 CTTTCATCAGTTGATAATTTTTTCCAATCATTAATATC 23996 | |||||| | ||||| ||||||| | || ||| Sbjct 1196645 CGCTCATCATCAGTCAATTTCATCCAATCTTCAAGATC 1196608 Score = 140 bits (154), Expect = 3e-28 Identities = 168/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || ||||| ||||| ||| ||||| |||||||||||||||| ||| || Sbjct 1197130 TCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTC 1197071 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | |||||||| ||||||||| ||| || || || ||||| ||||| || ||||| || Sbjct 1197070 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCA 1197011 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 || | | | |||||| ||||| ||| |||| |||||||| | ||||| ||| Sbjct 1197010 ACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCC 1196951 Query 23713 TTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGT 23759 ||| |||||||||| || |||||||| || || || | |||||| Sbjct 1196950 TTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATA-AAAAGT 1196905 >seq1042 Length=111944 Score = 129 bits (142), Expect = 6e-25 Identities = 149/200 (75%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 23773 TCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCA 23832 ||| | ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586 Query 23833 ATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTA 23892 || || |||||||||||||||||||| |||| | |||||| || | | |||||| |||| Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646 Query 23893 GCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATA 23952 | | |||||| |||| || |||| |||||| || || || || | || |||| Sbjct 80647 ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATA 80706 Query 23953 AAATGTC---TTTCATCAGT 23969 || || | ||||||||| Sbjct 80707 AAGTGACGCTCTTCATCAGT 80726 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| | | ||||| || || ||| ||||| ||| |||||||||||| ||| | Sbjct 80220 TCATCACGAAAAATCAGCTCGTTGCTAAAAGTTAAGCCTAGCATTAATCCTCTTTTCGTC 80279 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| || || ||| || || || ||||| | |||||| ||||| | | Sbjct 80280 AACCATGTTATTGAAGGAACATTTCCAGATAAAAATATACCTTTAACAGCAGCAAATGTC 80339 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 || | | | |||||| ||||| ||| ||||| ||||||||| ||||| ||| Sbjct 80340 ACTAACCTTTCACCAAAAGTTGCTTTACTATCAGTAATCCATTTAAGAACCCAATCTGCC 80399 Query 23713 TTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 | ||||||||| || |||||| | || || Sbjct 80400 ATTTTTTTTACACATGGCATGGTTTCAGTAGCATT 80434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521332042495000