Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq35 145 8e-30
seq1042 129 6e-25
>seq35
Length=1961283
Score = 145 bits (160), Expect = 8e-30
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838
|||||||| ||||||| ||| ||||||||||| ||||| |||||||| || || ||
Sbjct 1196825 ATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATTATTTGG 1196766
Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAA 23898
|||||||||||||||||||| |||| | |||||| || | | | ||||||| | | | |
Sbjct 1196765 AACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCAACAAGA 1196706
Query 23899 TTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGT 23958
||||| || ||||| ||||| ||||||||| || || | || | |||||| ||
Sbjct 1196705 TTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATAAAGTGA 1196646
Query 23959 CTTTCATCAGTTGATAATTTTTTCCAATCATTAATATC 23996
| |||||| | ||||| ||||||| | || |||
Sbjct 1196645 CGCTCATCATCAGTCAATTTCATCCAATCTTCAAGATC 1196608
Score = 140 bits (154), Expect = 3e-28
Identities = 168/227 (74%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592
||||| || ||||| ||||| ||| ||||| |||||||||||||||| ||| ||
Sbjct 1197130 TCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTC 1197071
Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652
| |||||||| ||||||||| ||| || || || ||||| ||||| || ||||| ||
Sbjct 1197070 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCA 1197011
Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712
|| | | | |||||| ||||| ||| |||| |||||||| | ||||| |||
Sbjct 1197010 ACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCC 1196951
Query 23713 TTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGT 23759
||| |||||||||| || |||||||| || || || | ||||||
Sbjct 1196950 TTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATA-AAAAGT 1196905
>seq1042
Length=111944
Score = 129 bits (142), Expect = 6e-25
Identities = 149/200 (75%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 23773 TCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCA 23832
||| | ||||||||||| |||| ||| ||||||||||| ||||| ||||| || ||
Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586
Query 23833 ATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTA 23892
|| || |||||||||||||||||||| |||| | |||||| || | | |||||| ||||
Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646
Query 23893 GCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATA 23952
| | |||||| |||| || |||| |||||| || || || || | || ||||
Sbjct 80647 ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATA 80706
Query 23953 AAATGTC---TTTCATCAGT 23969
|| || | |||||||||
Sbjct 80707 AAGTGACGCTCTTCATCAGT 80726
Score = 86.0 bits (94), Expect = 7e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592
||||| | | ||||| || || ||| ||||| ||| |||||||||||| ||| |
Sbjct 80220 TCATCACGAAAAATCAGCTCGTTGCTAAAAGTTAAGCCTAGCATTAATCCTCTTTTCGTC 80279
Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652
| ||| ||||| || || ||| || || || ||||| | |||||| ||||| | |
Sbjct 80280 AACCATGTTATTGAAGGAACATTTCCAGATAAAAATATACCTTTAACAGCAGCAAATGTC 80339
Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712
|| | | | |||||| ||||| ||| ||||| ||||||||| ||||| |||
Sbjct 80340 ACTAACCTTTCACCAAAAGTTGCTTTACTATCAGTAATCCATTTAAGAACCCAATCTGCC 80399
Query 23713 TTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747
| ||||||||| || |||||| | || ||
Sbjct 80400 ATTTTTTTTACACATGGCATGGTTTCAGTAGCATT 80434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521332042495000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |