Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 165 6e-36
seq231 98.7 7e-16
>seq2302
Length=121279
Score = 165 bits (182), Expect = 6e-36
Identities = 177/234 (76%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || |||| |||| |||||||| |||||| || || ||||| ||||||||
Sbjct 53185 TTGCATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTA 53244
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| || || |||| || || ||||| ||||||||||||||||| ||||| ||
Sbjct 53245 GTCGGAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTC 53304
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | ||||||||| || ||||| ||| | || | |||| || | ||
Sbjct 53305 TGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGA 53364
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 53365 TTCCACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418
Score = 161 bits (178), Expect = 7e-35
Identities = 176/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || |||| |||| |||||||| |||||| || || ||||| ||||| ||
Sbjct 52729 TTGCATACCACCTCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATA 52788
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | ||| ||| |||| || || ||||| ||||||||||||||||| || || ||
Sbjct 52789 GTCAGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTC 52848
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | ||||||||| || ||||| ||| | || | |||| || | ||
Sbjct 52849 TGGTGGGATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGA 52908
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 52909 TTCCACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 52962
Score = 161 bits (178), Expect = 7e-35
Identities = 176/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || |||| |||| |||||||| |||||| || || ||||| ||||||||
Sbjct 52957 TTGCATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTA 53016
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| || || |||| || || ||||| || |||||||||||||| ||||| ||
Sbjct 53017 GTCGGAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTC 53076
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | ||||||||| || ||||| ||| | || | |||| || | ||
Sbjct 53077 TGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGA 53136
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 53137 TTCCACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53190
Score = 156 bits (172), Expect = 3e-33
Identities = 175/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || |||| |||| |||||||| |||||| || || ||||| ||||||||
Sbjct 53641 TTGCATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTA 53700
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| || || |||| || || ||||| ||||||||||||||||| ||||| ||
Sbjct 53701 GTCGGAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTC 53760
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | ||||||||| || ||||| ||| | || | || | || | ||
Sbjct 53761 TGGTGGGATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGA 53820
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| |||| ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 53821 TTCCACTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874
Score = 152 bits (168), Expect = 4e-32
Identities = 174/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || |||| |||| |||||||| |||||| || || ||||| ||||||||
Sbjct 53413 TTGCATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTA 53472
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| || || |||| || || ||||| ||||||||||||||||| || || ||
Sbjct 53473 GTCGGAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTC 53532
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | ||||||||| || ||||| ||| | || | || | || | ||
Sbjct 53533 TGGTGGGATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGA 53592
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| |||| ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 53593 TTCCACTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53646
Score = 147 bits (162), Expect = 2e-30
Identities = 173/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || |||| |||| |||||||| |||||| || || ||||| ||||||||
Sbjct 53869 TTGCATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTA 53928
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| || || |||| || || ||||| || |||||||||||||| || |||||
Sbjct 53929 GTCGGAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATC 53988
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | ||||||||| || ||||| ||| | || | || | || | ||
Sbjct 53989 TGGTGGGATACCTTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGA 54048
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| |||| ||||| |||||||| ||||||||||| |||||||| |||||
Sbjct 54049 TTCCACTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102
Score = 147 bits (162), Expect = 2e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| |||| |||||||| |||||| || || ||||| |||||||| ||
Sbjct 54100 CATACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTC 54159
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| || || |||| || || ||||| ||||||||||||||||| || || ||||
Sbjct 54160 GGAAAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGG 54219
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | |||||| || || ||||| || | || | |||| || | |||||
Sbjct 54220 TGGGATACCTTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTC 54279
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||| ||||| |||||||| ||||||||||| || |||||||||||
Sbjct 54280 CACCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330
Score = 132 bits (146), Expect = 3e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|||||||| |||||| || || ||||| ||||| || |||| || || | ||
Sbjct 52522 CAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATC 52581
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|| || ||||| ||||||||||||| ||| ||||| |||| || | ||||||||| ||
Sbjct 52582 TTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTC 52641
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
||||| ||||| || | || | || | ||||| || |||| ||||| ||
Sbjct 52642 TTGGATCTTGGCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATGGT 52701
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| ||||||||||| ||||||||||||||
Sbjct 52702 CTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 52734
Score = 87.8 bits (96), Expect = 1e-12
Identities = 162/238 (68%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | || | |||||| | |||||| || || || |||||||||||
Sbjct 54325 TTGCATACCACCACGGAGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTA 54384
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | ||| ||| |||| || || ||||| ||||||||||||||||| || || ||
Sbjct 54385 GTCAGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTC 54444
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
| || | |||||| || || ||||| || | || | |||| || | ||
Sbjct 54445 AGGTGGAATACCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGA 54504
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|| || |||| || || || || || || | || || || ||||| |||||| ||
Sbjct 54505 CTCAACTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTTG 54562
>seq231
Length=580210
Score = 98.7 bits (108), Expect = 7e-16
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
||||||||||||| ||||| | | | || | || || |||||||| ||||| ||||
Sbjct 340829 CCTTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 340888
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267
||||||| || ||||| | || | |||||| || || || || || | ||
Sbjct 340889 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTT 340948
Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327
| || ||||| | || || ||||| | || || ||||| || || ||||| |||||||
Sbjct 340949 CGATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGA 341008
Query 44328 AGATTTGCATGATG 44341
| ||||||||| ||
Sbjct 341009 AAATTTGCATGTTG 341022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359885431861725
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