Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq430 109 7e-19 seq225 86.0 8e-12 >seq430 Length=650307 Score = 109 bits (120), Expect = 7e-19 Identities = 226/334 (68%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 50474 AGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAA 50533 ||| || || ||||||||||| || ||||||||| |||||| ||| || || || | Sbjct 88325 AGGTGACTTGGGACCTGTTTATGGATTTCAATGGCGACATTATGGTGCTGAGTATGTAGA 88266 Query 50534 T-TGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592 | ||| | ||||| || ||||| | |||||||| ||||| | || | || Sbjct 88265 TGTGC-ATACTGATTACTCTGGAAAAGGCATTGATCAACTTCAAAACGTCATCAATACAA 88207 Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652 | ||||| ||||| |||||| |||| || | |||| ||| ||||||||| ||| || Sbjct 88206 TCAAAACTAACCCTGACGATAGGCGAATGCTTATGATCGCATGGAATCCATGTGATGTAC 88147 Query 50653 ATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTTT 50712 | ||| | ||||| ||||||||| | | || |||| || | | || | Sbjct 88146 CTAAAATGGCCTTACCACCGTGTCATTGTCTGGTACAGTTTTTTGTCGCCGATGGCTATC 88087 Query 50713 TATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAG 50772 | || |||||| || ||| ||||||| || |||||| |||| || || || || | | Sbjct 88086 TGTCGTGTCAAATGTACCAACGATCAGCAGACATGGGTCTAGGAGTACCCTTTAATATTG 88027 Query 50773 CTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806 | ||| | ||| | || ||| |||| || || Sbjct 88026 CCAGTTATTCATTACTTACATATATGATAGCCCA 87993 >seq225 Length=1067286 Score = 86.0 bits (94), Expect = 8e-12 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 156165 AACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCG 156224 || |||| ||| | || ||||| |||||||| |||||||||| || | || ||| || Sbjct 324751 AATAATCTTCTTATATTTGCTTCAGATTCACCAACATATTTGTCCAAAATTTGAGGGCCA 324692 Query 156225 TTAACTATTTTGACGGGTC--GTG-ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAAT 156281 ||||| |||||| || || ||| |||||| | ||| | || | |||||||||| Sbjct 324691 TTAACAATTTTG--GGTTCACGTGCATTTAACAT-TTGTCCAATTTGTCTAGCCATTAAT 324635 Query 156282 GTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAAT 156341 |||||||| ||||| || || ||| ||| | ||||| | ||||| || ||||| Sbjct 324634 GTTTTACCAGTTCCAGGTGGACCAAATAGCAAAATACCTTTGACGTGTTTGCACCCTAAG 324575 Query 156342 TT 156343 || Sbjct 324574 TT 324573 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 155916 ATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTG 155975 ||||| | ||| | || |||||||| | ||| ||||| ||||| | ||| ||| || Sbjct 325068 ATCTT-ACTTCAAGTCGGCCAGGTCTCAGTAACGCTTCATCAATCATGTCTCTTCTATTA 325010 Query 155976 GTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAAT 156035 ||||||||||| | ||| ||||| |||| || || || || ||||||| ||| || Sbjct 325009 GTCATACCTATAACTAAGATGTTATTTAGTTGCTCAACTCCATCAATTTTAGCCAACAAC 324950 Query 156036 TGATTGACTACGGCGTCGTGC 156056 ||||| || || | ||||||| Sbjct 324949 TGATTAACCACAGTGTCGTGC 324929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666875702823000