Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_033423.1
Length=208501
Score E
Sequences producing significant alignments: (Bits) Value
seq430 109 7e-19
seq225 86.0 8e-12
>seq430
Length=650307
Score = 109 bits (120), Expect = 7e-19
Identities = 226/334 (68%), Gaps = 2/334 (1%)
Strand=Plus/Minus
Query 50474 AGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAA 50533
||| || || ||||||||||| || ||||||||| |||||| ||| || || || |
Sbjct 88325 AGGTGACTTGGGACCTGTTTATGGATTTCAATGGCGACATTATGGTGCTGAGTATGTAGA 88266
Query 50534 T-TGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592
| ||| | ||||| || ||||| | |||||||| ||||| | || | ||
Sbjct 88265 TGTGC-ATACTGATTACTCTGGAAAAGGCATTGATCAACTTCAAAACGTCATCAATACAA 88207
Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652
| ||||| ||||| |||||| |||| || | |||| ||| ||||||||| ||| ||
Sbjct 88206 TCAAAACTAACCCTGACGATAGGCGAATGCTTATGATCGCATGGAATCCATGTGATGTAC 88147
Query 50653 ATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTTT 50712
| ||| | ||||| ||||||||| | | || |||| || | | || |
Sbjct 88146 CTAAAATGGCCTTACCACCGTGTCATTGTCTGGTACAGTTTTTTGTCGCCGATGGCTATC 88087
Query 50713 TATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAG 50772
| || |||||| || ||| ||||||| || |||||| |||| || || || || | |
Sbjct 88086 TGTCGTGTCAAATGTACCAACGATCAGCAGACATGGGTCTAGGAGTACCCTTTAATATTG 88027
Query 50773 CTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806
| ||| | ||| | || ||| |||| || ||
Sbjct 88026 CCAGTTATTCATTACTTACATATATGATAGCCCA 87993
>seq225
Length=1067286
Score = 86.0 bits (94), Expect = 8e-12
Identities = 131/182 (72%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 156165 AACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCG 156224
|| |||| ||| | || ||||| |||||||| |||||||||| || | || ||| ||
Sbjct 324751 AATAATCTTCTTATATTTGCTTCAGATTCACCAACATATTTGTCCAAAATTTGAGGGCCA 324692
Query 156225 TTAACTATTTTGACGGGTC--GTG-ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAAT 156281
||||| |||||| || || ||| |||||| | ||| | || | ||||||||||
Sbjct 324691 TTAACAATTTTG--GGTTCACGTGCATTTAACAT-TTGTCCAATTTGTCTAGCCATTAAT 324635
Query 156282 GTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAAT 156341
|||||||| ||||| || || ||| ||| | ||||| | ||||| || |||||
Sbjct 324634 GTTTTACCAGTTCCAGGTGGACCAAATAGCAAAATACCTTTGACGTGTTTGCACCCTAAG 324575
Query 156342 TT 156343
||
Sbjct 324574 TT 324573
Score = 84.2 bits (92), Expect = 3e-11
Identities = 104/141 (74%), Gaps = 1/141 (1%)
Strand=Plus/Minus
Query 155916 ATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTG 155975
||||| | ||| | || |||||||| | ||| ||||| ||||| | ||| ||| ||
Sbjct 325068 ATCTT-ACTTCAAGTCGGCCAGGTCTCAGTAACGCTTCATCAATCATGTCTCTTCTATTA 325010
Query 155976 GTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAAT 156035
||||||||||| | ||| ||||| |||| || || || || ||||||| ||| ||
Sbjct 325009 GTCATACCTATAACTAAGATGTTATTTAGTTGCTCAACTCCATCAATTTTAGCCAACAAC 324950
Query 156036 TGATTGACTACGGCGTCGTGC 156056
||||| || || | |||||||
Sbjct 324949 TGATTAACCACAGTGTCGTGC 324929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 666875702823000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |