Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2302 87.8 2e-12 >seq2302 Length=121279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| ||||||| || || || || || ||||||||||||||||| Sbjct 52508 CCGCCACGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAA 52567 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || ||||| ||||| || ||||| || || ||||| | || Sbjct 52568 AGGGTACGTCCATCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGG 52627 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTG--TCGCTCGACTCCA 41813 | | |||||||| ||| || |||| || || | || || || || | Sbjct 52628 ATACCTTCCTTGTCTTGGATCTTGGCCTTC-ACATTTTCA-ATTGAATCAGAAGATTCTA 52685 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || || || || || ||||||||||| || ||||| Sbjct 52686 CTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 52734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462165742210000