Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq130 105 7e-18 seq4284 91.5 2e-13 >seq130 Length=3389925 Score = 105 bits (116), Expect = 7e-18 Identities = 276/417 (66%), Gaps = 8/417 (2%) Strand=Plus/Minus Query 119777 TCGAATTTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGG 119836 ||| | ||||| || || || ||||| ||||| || || ||| | |||||| Sbjct 1199604 TCGTAGTTCATGTAGCGAATTTTTCCAAACACTTCCCGCTCACGCCATCCCTGGTCGTGA 1199545 Query 119837 AGCCCCGCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCG 119896 | ||||| | || ||| | ||| || ||||| || || || || || || |||| | Sbjct 1199544 ATGCCCGCAATGGACCACATGCAGCCAACGTAACCATTCGGGTCACGGCCGTCCAACTGG 1199485 Query 119897 TATTTATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCAGGAGTCTCGCTCCATT 119954 || |||||| | ||| || | || || | | ||| || ||||| | | |||| | Sbjct 1199484 TAGCGATCGTTCAGGTAAATT--GCCGTTTCAAGAGCTTCCTCCGGAGTTTTGGTCCACT 1199427 Query 119955 CCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCA 120014 ||| || || || ||||| ||||| || || | || |||||||||||||| |||| Sbjct 1199426 CCAAAATCTTCTTTGCCCAATACATTCGCAAAAAGCCGTGCATTTTACCTTCCTTGACCA 1199367 Query 120015 TTTGAAGTTGTGCGGCGTTCCATAAGGGATCGTGTGTACGGGCGTGTTCTAAACTATACG 120074 | |||| |||||| | |||||| || || || || || || || || || | | Sbjct 1199366 TCTGAATTTGTGCAGAGTTCCACAAATCGTCATGAGTTCGAGCTTGCTCCAACTGGTCCC 1199307 Query 120075 TATCGTATAGATAGGGTCGAGTATCCCGTCGATGTTCGTCTAACGTACGTAAAGCCCA-- 120132 | ||| | ||||| ||| ||||| ||||| || || || || ||||| Sbjct 1199306 TGCTGTAGACATAGGTTCGTTTATCCTTGCGATGGTCATCCAATGTTTTCTGGGCCCAAT 1199247 Query 120133 CGGATGCGTCGACGTAATAGAATCGTATCGTTTATTATAATAACAAAAGTTATCGGA 120189 || |||| | ||| | ||||| ||| || |||||||||||||||||||| Sbjct 1199246 CGTATGCTCCTTTCAAATTG--TCGTAGTTTTTGTTGTAATAACAAAAGTTATCGGA 1199192 >seq4284 Length=891408 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || ||||| || || || ||||||||| ||| | || ||||| || || ||| Sbjct 84833 ATGTAAGTATCAATAAGCAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTTGA 84774 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 |||||||| ||||| || ||||| | | || || ||| | ||| |||||| | || Sbjct 84773 AATCCGTAGAAGCAACGCGCTTCGGTGACCTGGACCTCCTGGCTGAAACGTTCCACAAGG 84714 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 || |||||||||||||| ||| ||||| || || |||| Sbjct 84713 TTCTCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCA 84674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517514825444760