Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq98 136 4e-27 seq130 129 6e-25 seq4600 114 1e-20 >seq98 Length=5729030 Score = 136 bits (150), Expect = 4e-27 Identities = 545/850 (64%), Gaps = 10/850 (1%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || |||||||||||||| || || | || || ||||||||| ||||||||| Sbjct 2603189 TTCTCAAAGAAGTTAGTTTTACCTTCAAGCGAAATGAACTCCATAAAACTAAAGGGATTC 2603248 Query 15992 GTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATT 16049 | | || |||| | | || ||| | | | | | | || ||| || || |||| Sbjct 2603249 TTCGTATTGTAAATCTTATCGATGACCA-ACTCGAGCAGC-AGTCCATCAGCCACGAATT 2603306 Query 16050 CTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTG 16109 | ||||| || ||| | ||| ||||| || || | || |||||||| | ||| | Sbjct 2603307 CAATATACTGCGACAAAAGGTCACAATTCATGCCAAGCAGGTCAACCGGAAGGGTTTTCG 2603366 Query 16110 TTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAG 16169 | | |||| |||| |||| || | ||| || | ||| | | || || | Sbjct 2603367 TCAGGAATTCCTGTTTGATCAGGACTGTTTCGCGGATAAACTCGATCACATGTTCTTGTG 2603426 Query 16170 ACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGT 16229 | ||| | || || | ||| ||||| ||| | | || || || || ||||||| Sbjct 2603427 ATGGTTTCTGTACCAGATATTTGAACATAAGAGAAACAAATTCCATGTGCAGGCCTTCGT 2603486 Query 16230 CTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACC 16289 | | ||| | ||||| ||| || |||| ||| ||| | ||| || ||||| |||| Sbjct 2603487 CACGTGAGATCAATTCGTAGGAGAATGTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACC 2603546 Query 16290 AGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTA 16349 | || | || || || ||||| || | || ||| || || || | | Sbjct 2603547 AATTGATGGATGCGAAACTTCCACTGAAGAAAATTTCTTCCACAACGGCGAAGGCTACGA 2603606 Query 16350 ATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTT 16409 ||||| || | | || | ||| | | |||| ||| | | |||| ||||| | Sbjct 2603607 CGCGTTCTCCGAAGTTGGCCTTTTTGCTTGAATTCCAGTTCAATGTCTATTCAGCTTTCT 2603666 Query 16410 GTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCT--GAATATC 16467 || | ||| || | || ||||| || ||||| | ||| ||| | |||| | Sbjct 2603667 TCTTCACACAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGTTTGGAATCAC 2603726 Query 16468 GATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTAT 16527 || ||||| ||||| || || | ||||||||| ||| | ||| || || || || Sbjct 2603727 GA--ATATAAGTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCCATTGCCAT 2603784 Query 16528 CTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGC 16587 ||||||||||||||||| || ||||| | | || | ||| | || |||||| | Sbjct 2603785 TTGAAATCCATAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAACGTTCCAC 2603844 Query 16588 CAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||||||| |||| | | || || || |||| || ||||||| || ||||| Sbjct 2603845 GAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATGTGAGATGAA 2603904 Query 16648 ATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTC 16707 | || ||| | || | || | | |||||| || |||||| || | ||| ||||| Sbjct 2603905 GTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAGATCGACTTC 2603964 Query 16708 TTCTGGCGTCCA-AAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 ||| ||||| | || | ||| |||||| || ||||| | |||||| ||| || | Sbjct 2603965 CTCTATTGTCCAGAGAGAT-GCCTCTGCCTACTTCTACATCTGCCAAATGCCATGATACT 2604023 Query 16767 GTATGGGAAA 16776 | ||||| || Sbjct 2604024 GGATGGGGAA 2604033 >seq130 Length=3389925 Score = 129 bits (142), Expect = 6e-25 Identities = 300/443 (68%), Gaps = 17/443 (4%) Strand=Plus/Minus Query 118930 TCGAATTTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGG 118989 ||| | |||||||| || || |||||||| || ||||| |||| | |||||| Sbjct 1199604 TCGTAGTTCATGTAGCGAATTTTTCCAAACACTTCCCGCTCACGCCATCCCTGGTCGTGA 1199545 Query 118990 AGTCCTGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCG 119049 | || || | | ||| | || || ||||| || || || || ||||| |||| | Sbjct 1199544 ATGCCCGCAATGGACCACATGCAGCCAACGTAACCATTCGGGTCACGGCCGTCCAACTGG 1199485 Query 119050 TACTTATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCATT 119107 || |||||| | ||| || | || || | | ||| |||||||| || |||| | Sbjct 1199484 TAGCGATCGTTCAGGTAAATT--GCCGTTTCAAGAGCTTCCTCCGGAGTTTTGGTCCACT 1199427 Query 119108 CCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCA 119167 ||| || || || ||||| ||||| || ||| | |||||||||||||| || || | || Sbjct 1199426 CCAAAATCTTCTTTGCCCAATACATTCGCAAAAAGCCGTGCATTTTACCTTCCTTGACCA 1199367 Query 119168 TCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGCGTGTTCTAAACTAG-AC 119226 |||||| |||||| | |||||| | | || || || || || || || |||| | | Sbjct 1199366 TCTGAATTTGTGCAGAGTTCCACAAATCGTCATGAGTTCGAGCTTGCTC-CAACTGGTCC 1199308 Query 119227 GTATCGTATAGATAGGGTCGTAAATCCTGTCGATGATCGTCTAACGTACGTAAAGCCCA- 119285 | ||| | ||||| |||| ||||| ||||| || || || || ||||| Sbjct 1199307 CTGCTGTAGACATAGGTTCGTTTATCCTTGCGATGGTCATCCAATGTTTTCTGGGCCCAA 1199248 Query 119286 -TGGATG---CGTTGAGGTAATAGAATCGTATAGTTTATTGTAATAACAAAAGTTGTCGG 119341 | ||| | || | ||| | ||||| ||| ||||||||||||||||| |||| Sbjct 1199247 TCGTATGCTCCTTTCA---AATTG--TCGTAGTTTTTGTTGTAATAACAAAAGTTATCGG 1199193 Query 119342 ATAATTCCCGTCGTACAA-CGAT 119363 | | || | ||| |||| |||| Sbjct 1199192 ACAGCTCTCTTCGAACAATCGAT 1199170 >seq4600 Length=436310 Score = 114 bits (126), Expect = 1e-20 Identities = 238/350 (68%), Gaps = 6/350 (2%) Strand=Plus/Plus Query 16430 TCTATGGCCTTAAACAATTTCTCTTTTTCCT--GAATATCGATTATATACGTATCAATCA 16487 || ||||| || ||||| | ||| ||| | |||| ||| ||||| ||||| || | Sbjct 110465 TCGATGGCATTGAACAAGTACTCCCTTTGTTTGGAATCACGA--ATATAAGTATCGATAA 110522 Query 16488 GTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC 16547 | | ||||||||| ||| | ||| || || || || ||||||||||||||||| | Sbjct 110523 GCAGCGAGTACATTTCACTGTGGACGTTTTCCATTGCAATTTGAAATCCATAGAAGCAAC 110582 Query 16548 GAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATAC 16607 | ||||| | | || | ||| | || |||||| | |||||||| |||| | | | Sbjct 110583 GTGCCTCGGTGACCTGGAGCTCCTGGCTGAAACGTTCCACGAGGTTCTCGTTCATGCTGC 110642 Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 | || || |||| || ||||||| || ||||| | || ||| | || | | Sbjct 110643 CATCGGAAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGA 110702 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTA 16726 | | | |||||| || |||||| || | ||| ||||| ||| ||||| | || | Sbjct 110703 GCTTTTCCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCAGAGAGAT- 110761 Query 16727 GCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 ||| |||||| || ||||| | |||||| ||| || || ||||| || Sbjct 110762 GCCTCTGCCTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAA 110811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511383990021240