Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq73 105 5e-18 >seq73 Length=471406 Score = 105 bits (116), Expect = 5e-18 Identities = 236/349 (68%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || ||||| | ||||| ||||| ||| | |||||||| || |||||||| Sbjct 408265 GGTGATCTAGGCCCGGTATACGGATTCCAATGGCGTCATTTTGGCGCCAAATATAAAACA 408206 Query 18849 TGTCAATCAA-ACTATTTACAGCAAGGAATCGATCAGCT-GCAAACTGTTATAGATACAA 18906 || |||| | |||| | ||| || ||||| ||| | ||| | || ||| || | Sbjct 408205 TG-CAATGATGACTACACAGGGCAGGGTATCGACCAGTTAGCAGAA-GTGATAAATCGCA 408148 Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 |||| || || ||| ||||| || || || | ||||| || | ||||||| Sbjct 408147 TTAAGACCAATCCAACGGATCGACGTATTATCATGAGTGCATGGAACCCGATAGATATCC 408088 Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026 | ||||| || ||||| || || || || |||| ||| ||||| || ||| Sbjct 408087 CACAAATGGCCCTTCCTCCTTGCCATTGCTTGGCGCAATTTTTCGTGGCAAATGGAGAAC 408028 Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTG 19086 | || || || |||| || |||| | ||||||||||| || || || ||||| || | Sbjct 408027 TTTCGTGTCAGTTATATCAACGATCAGCTGATATGGGCCTCGGAGTCCCATTCAATATCG 407968 Query 19087 CTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || | ||||| | || || | || | || || |||||||||||||| Sbjct 407967 CTAGTTATGCTTTACTGACTCATATGATGGCCCACGTTACAGGACTTAA 407919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399480838381065