Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq73 89.7 4e-13 >seq73 Length=471406 Score = 89.7 bits (98), Expect = 4e-13 Identities = 227/343 (66%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 || || || || ||||| ||| | | || ||| ||||| || || ||||| ||||| Sbjct 407928 GTAACGTGGGCCATCATATGAGTCAGTAAAGCATAACTAGCGATATTGAATGGGACTCCG 407987 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | |||||||||||||||| |||||| | ||||| ||||| | ||||| || || Sbjct 407988 AGGCCCATATCAGCTGATCGTTGATATAACTGACACGAAAGTTCTCCATTTGCCACGAAA 408047 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAA 101932 ||||| || ||| ||||| || | |||||| || || ||| ||||| Sbjct 408048 AATTGCGCCAAGCAATGGCAAGGAGGAAGGGCCATTTGTGGGATATCTATCGGGTTCCAT 408107 Query 101933 GCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTT 101992 |||| ||| | || | || ||| || || || || || || || |||| | | | Sbjct 408108 GCACTCATGATAATACGTCGATCCGTTGGATTGGTCTTAATGCGATTTATCACTTCTGCT 408167 Query 101993 AATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACA-CCTTTATATTCTGCTCCGAA 102051 || ||||| | || | ||| | || || | || |||||||| || || || Sbjct 408168 AACTGGTCGATACCCTGCCCTGTGTAGTC-ATCATTGCATGTTTTATATTTGGCGCCAAA 408226 Query 102052 ATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCA 102094 ||| | ||| || ||||| || || || || ||||| ||| || Sbjct 408227 ATGACGCCATTGGAATCCGTATACCGGGCCTAGATCACCTGCA 408269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361230256123007