Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4280 439 3e-118 seq98 159 4e-34 seq4600 127 2e-24 seq4284 104 3e-17 >seq4280 Length=912600 Score = 439 bits (486), Expect = 3e-118 Identities = 880/1291 (68%), Gaps = 29/1291 (2%) Strand=Plus/Minus Query 53389 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 53448 ||| || ||||| | || ||||| || || | |||||| || || ||||| ||||| || Sbjct 357167 ATAGGTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGGCACCATA 357108 Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 || || ||||||||||| | || ||| || | ||| ||||| ||| || | ||||| Sbjct 357107 GTAGATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTGTCGTAAGGATA 357048 Query 53509 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568 | | | ||| || || || || | ||| || ||||| || ||||| || | || | Sbjct 357047 ACGCATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGGCG 356988 Query 53569 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 53628 | |||| || | || ||||| | ||||| ||||||| || || ||||| ||||| Sbjct 356987 CATATTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTTTGTTGAG 356928 Query 53629 GTTTCT---GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA-T 53684 || | | ||||| |||| | || || |||||||| | |||||| || ||| | Sbjct 356927 ATTCTTAGTGGCAATT--TTTG-CTACTTCTTTCAGTTTTTGGAAATCATAT-GTCTTGT 356872 Query 53685 C---TATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT--T 53739 | | | || |||||||||||||| || || || || |||||||| || | |||| | Sbjct 356871 CGGGTTTCACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTTCATCCT 356812 Query 53740 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799 | | | |||| | || || |||||||| || |||||||||||||| | || Sbjct 356811 TGGAGGAG--TATTCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCCGATGTT 356754 Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 || |||||||| || |||| || ||||||||||| || ||| | || ||| ||||| Sbjct 356753 CTGCTGATTACTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACCGGTTTC 356694 Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC- 53918 | ||||| || || || || ||| | | | || || | | | |||||| Sbjct 356693 CACTTGGGACTCGATGATTGCAAACCACAAATCTTGGGCTTTCACTTTCCGAATGTATCG 356634 Query 53919 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 || || | ||| ||||| ||| |||| | ||||||||| || ||||| |||| Sbjct 356633 TCCTTCCGCTT-CGTATGATGTGTACAGTTTTTCAAACTCCTCACCCCATG---TGTCGG 356578 Query 53979 AT---CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 54035 || ||||||||||||| || |||||||| |||| ||| ||| | ||| |||||| | Sbjct 356577 ATAGCCCAGGACATTCATGAGGGCACATCAAGCACCAGTCTTCGTTAGCCTCCACTCGCT 356518 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT---ATGTTCCT 54092 |||| || | ||| ||||||||||| || || | || |||| || || ||| Sbjct 356517 TCATGAACAAATCCGGAATCCAAAGCGCGTAGAACATGTCCCTGGCTCGGACATCTTCAG 356458 Query 54093 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 54152 || || || ||||| || | ||| |||||| | | || ||| |||||||||||| | Sbjct 356457 CG---CCGGTGTTCTTCTTTAAATCCAGGAACTCGAAAACATCGCCATGCCACGGTTCGA 356401 Query 54153 AGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 54212 || |||| | | || ||||| ||||| ||||||||||| | ||| | || |||| Sbjct 356400 GATAAATGGCAAAGGCACCTGGCCGCTTGTTACCTCCCTGATCAACGTACTTGGCAGTGT 356341 Query 54213 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 54272 |||| || || |||||||| ||||| | ||| ||||| || || || || | || | Sbjct 356340 TATTGTACACCCTCAACATGGGAATCAAACCGTTGGAAATTCCGTTCGTGCCAGCAATGT 356281 Query 54273 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGA 54332 || |||| | || | || | || || || || || || ||| ||| || | Sbjct 356280 AGGTTCCCTTTGCTCTGATGCAATGAACATTCAGGCCGATTCCTCCAGCCGATTTCGAAA 356221 Query 54333 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392 | || || || | || || || || ||||| ||||| || || || || ||||| | | Sbjct 356220 TCAACGCACACTGCTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGCTCATGGTCA 356161 Query 54393 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452 || || ||| |||| || | || | || |||| ||| | || || |||| Sbjct 356160 ACAGGAAGCAGGACGACAGCTGAGGTCGGCAGGTGGCCGCCGCAAACATCGTTGGCGAAG 356101 Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512 | || || || || | || || || | |||||||||||| || || | ||| ||||| Sbjct 356100 CATGAGTGAAATATCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGCGTCGATATCTT 356041 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 || ||||| | || || ||||| ||||||||||| || | ||| ||||||||| Sbjct 356040 CGCCGTGGATTCCAATGGCAACCCGCATCAACATGTGCTGTGGCCGTTCCACGATCTTGC 355981 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 || || || ||||| || ||| ||||| || || || || |||||||| || || Sbjct 355980 CTTTGATCTTGAGCAAATACGATCGTTCCAGCGTCTTGAAGCCGAAATAGTTATAGCCAA 355921 Query 54633 AGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 |||| || |||||||| ||| | || || || Sbjct 355920 AGTCCCGATCGTAAATGATAGCCGAATTCAG 355890 >seq98 Length=5729030 Score = 159 bits (176), Expect = 4e-34 Identities = 362/542 (67%), Gaps = 3/542 (1%) Strand=Plus/Plus Query 24171 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 24230 || ||||||| ||| || || || || ||| | || |||||||| || | |||| ||| Sbjct 2603495 ATCAATTCGTAGGAGAATGTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATG 2603554 Query 24231 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCT 24290 || || || |||| ||||||||| |||| || | || ||||| | | | |||| Sbjct 2603555 GATGCGAAACTTCCACTGAAGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCT 2603614 Query 24291 CCATAACCGGCGCTGT--CATGTAT-CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 24347 || | ||| | | | || || ||| || | | | || || ||||| || ||| Sbjct 2603615 CCGAAGTTGGCCTTTTTGCTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACA 2603674 Query 24348 CAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAT 24407 || |||| | || || ||||| || | || | ||| || ||| || ||| Sbjct 2603675 CAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAA 2603734 Query 24408 GTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCG 24467 ||||| || | || |||||||| || | |||||| || |||||||||||||| Sbjct 2603735 GTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCA 2603794 Query 24468 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCA 24527 ||||| || | |||||||| | ||| | || | || ||||| | | || || Sbjct 2603795 TAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAACGTTCCACGAGGTTCTCG 2603854 Query 24528 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 24587 |||| | || || || |||| || |||||||||||| || || | || ||| Sbjct 2603855 TTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCG 2603914 Query 24588 TCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTC 24647 ||| | || || | |||||| | ||||||||| | ||| ||||| || | |||| Sbjct 2603915 CCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTC 2603974 Query 24648 CAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAA 24707 || | ||||||||||||| || ||||| | ||| ||| ||||||| || || || ||| Sbjct 2603975 CAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAAA 2604034 Query 24708 AT 24709 || Sbjct 2604035 AT 2604036 >seq4600 Length=436310 Score = 127 bits (140), Expect = 2e-24 Identities = 256/380 (67%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 24330 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 24389 || || ||||| || ||||| |||| | || || ||||| || | || | ||| Sbjct 110435 TCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGT 110494 Query 24390 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 24449 || ||| || ||| ||||| || | || |||||||| || | |||||| Sbjct 110495 TTGGAATCACGAATATAAGTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCC 110554 Query 24450 ATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAAT 24509 || || ||||||||||| ||||| || | |||||||| | ||| | || | || Sbjct 110555 ATTGCAATTTGAAATCCATAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA 110614 Query 24510 CGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGT 24569 ||||| | | || || |||| | || || || |||| || |||||||||||| Sbjct 110615 CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATGT 110674 Query 24570 TTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATA 24629 || || | || ||| ||| | || || | |||||| | ||||||||| | | Sbjct 110675 GAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAGA 110734 Query 24630 TCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 24689 || ||||| || | |||||| | ||||||||||||| || ||||| | ||| ||| || Sbjct 110735 TCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCCA 110794 Query 24690 TGATATTGAATTGGAAAAAT 24709 ||||| || || || ||||| Sbjct 110795 TGATACTGGATGGGGAAAAT 110814 >seq4284 Length=891408 Score = 104 bits (114), Expect = 3e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || |||||||| | || |||||||| || | ||||| || || ||||||||| Sbjct 84830 TAAGTATCAATAAGCAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTTGAAAT 84771 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 |||||||| || | || ||||| | ||| || || | || ||||| | | || Sbjct 84770 CCGTAGAAGCAACGCGCTTCGGTGACCTGGACCTCCTGGCTGAAACGTTCCACAAGGTTC 84711 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 24584 || ||||| || || || || ||||| || |||| |||||| || || | || Sbjct 84710 TCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCACATGTGAGATGAAGTGCTTC 84651 Query 24585 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 24644 ||| | | | || || | |||||| | ||||||||| | ||| ||||| || ||| Sbjct 84650 TCGCCGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAGAGAGATCGACTTCCTCTACT 84591 Query 24645 GTCCAAAATGATGCCTCTGCCT 24666 ||||| || ||||||||||||| Sbjct 84590 GTCCAGAAAGATGCCTCTGCCT 84569 Score = 96.9 bits (106), Expect = 4e-15 Identities = 166/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 24119 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 24178 || ||| ||||| | ||| || || || ||| || || ||||| | || ||||| Sbjct 85384 ATATTTGAACATAAGACAAGCAAAGTCCGTGTGCAGGCCTTCGTCACGTGAGATCAATTC 85325 Query 24179 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 24238 |||||| || || || || ||||| || |||||||| || | |||||| ||||| || || Sbjct 85324 GTTGGAGAATGTTAGCCCAGGCATCAGTCCACGCTTCTTCAACCAAAAGATGGATGCGAA 85265 Query 24239 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACC 24298 |||| ||||||||| ||||| || || || ||||| | | | |||||| | Sbjct 85264 ACTTCCACTAAAGAAAATACCTTCCACGGCGGCGAAGGCTACGACGCGTTCTCCGAAGTT 85205 Query 24299 GGCGCTGT--CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 24354 ||| | | | || ||||| || ||||| || || ||||| || ||||| |||| Sbjct 85204 GGCCTTTTTGCTTGAAATCCAGTTCAATGCCCAGTCAGCTTTCTTCTTCACACAGGGCA 85146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593686295829360