Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30]
4,757 sequences; 1,383,974,186 total letters
Query= NC_001847.1
Length=135301
Score E
Sequences producing significant alignments: (Bits) Value
seq3013 145 7e-30
>seq3013
Length=6250
Score = 145 bits (160), Expect = 7e-30
Identities = 291/421 (69%), Gaps = 28/421 (7%)
Strand=Plus/Minus
Query 98052 GACAGCGGCGAGGGGTGGCTGTACGTCAGCACGAGGTGCCGCTTCCCGGCCGCCCCAAAG 98111
|||||||||||||||||| | |||| ||||| |||||||||| | || | || |
Sbjct 6084 GACAGCGGCGAGGGGTGGTTCGACGTGAGCACCAGGTGCCGCTGCGCGTC--GATCAGCG 6027
Query 98112 GCC-----CGCTGGGCGTGCGCGCCCCAGAGCATGAACACCAGCGGGCCGC-TCTCCGCG 98165
||| ||| ||||||| |||||| |||||||||||| ||||||||| | |||||
Sbjct 6026 GCCGCTTGGACTGCGCGTGCGAGCCCCACAGCATGAACACC-GCGGGCCGCGCCGCCGCG 5968
Query 98166 CTCAGGCGGGCCAGTACCGCGTGCACCAGCCGCCCCCAGCCCAGGCTAGAGTGCGAGCCC 98225
| || | |||| | ||||||| |||| | |||||||| || | ||| | |
Sbjct 5967 CCCACGTGGGCGATCACCGCGTCGGTCAGCGCCTCCCAGCCCTTGCCGGCGTGGCTGGCG 5908
Query 98226 GGC-GCCCCGCTCCGCACGGTGAGCGAGGTGTTAAGCAGCAGCACGCCGCGGCGCGCCCA 98284
||| | || || | ||||||||||| |||||| ||||||||||||||| ||| |||||
Sbjct 5907 GGCTGGGCCTCTTC-CACGGTGAGCGTGGTGTTCAGCAGCAGCACGCCGTTGCGGGCCCA 5849
Query 98285 GTCCTCTAGGCAGCCG---TGCGACGGCC--GCGG--AGCTCC-GGGAAAGTTCTTCTGC 98336
| | |||| |||| || ||||| |||| | | || | ||| || ||
Sbjct 5848 CTTGACCAGGCTGCCGCCCGGCTCCGGCCAGGCGGGAAACGCCACGCCAAGGTC----GC 5793
Query 98337 ACGGCAGC-----GTAGATGTTCTGGAGGCTGGGTGGGACCGGAACGCCGCGGTTCACGC 98391
| ||||| | ||||||| | || || || | | | |||||| | |||
Sbjct 5792 GCTGCAGCTCCTTGAAGATGTTGCGCAGCGACGGCGGCAGCTGCACGCCGGGCGCGACGG 5733
Query 98392 TAAAAGCCAAGCCGTGGGCTTGCCCGCGGCTGTGATAGGGGTCCTGGCCCAGAATGACAA 98451
||| |||| || | ||| || ||||||| ||| || |||||||| ||||| ||||| |
Sbjct 5732 AAAACGCCAGCCCCTCGGCCTGGCCGCGGCCGTGGTACGGGTCCTGCCCCAGGATGACCA 5673
Query 98452 C 98452
|
Sbjct 5672 C 5672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432813305787974
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |