Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq100 100 2e-16 seq251 96.9 3e-15 >seq100 Length=1779872 Score = 100 bits (110), Expect = 2e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | |||||| ||||| || ||||| ||||| | |||||| || | || Sbjct 1410465 AGCACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 1410406 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || || | || | | |||||| || ||| | ||||||||||| Sbjct 1410405 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTGTCC 1410346 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || ||||| || | ||| |||||| Sbjct 1410345 TGGATCTTGGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGGGTGATGGTC 1410286 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATC 21183 ||||| || | || ||||| || || ||||| ||| ||| Sbjct 1410285 TTGCCCGTAAGGGTCTTGACGAAGATCTGCATCTTGGATC 1410246 >seq251 Length=2698768 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 20984 CTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATA 21043 |||||| || ||||| || |||| |||||| || | ||||||||||| || || || | Sbjct 661770 CTCCTTCTGGATGTTGTAATCCGACAGGGTACGGCCATCCTCCAGCTGCTTACCGGCGAA 661711 Query 21044 AATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTG 21103 || | | |||||| ||| ||| | || ||||| || |||||| ||||| | Sbjct 661710 GATCAAACGCTGCTGATCCGGGGGGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATT 661651 Query 21104 GCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 ||| || || ||| || |||| ||| |||||||| ||||||| |||||||| Sbjct 661650 CTCGATCGTGTCCGAGGGTTCGACCTCCAAGGTGATGGTCTTACCGGTTAGGGTTTTGAC 661591 Query 21164 AAATATTTGCATT-TTG-AATCTCT 21186 || || |||||| ||| ||||||| Sbjct 661590 GAAAATCTGCATTGTTGAAATCTCT 661566 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | || |||| ||| | |||| ||||| || ||||| ||||| | Sbjct 663173 CCTCCTCGCAGACGAAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTCGGAA 663114 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||| || || ||| | || | | ||||||||| ||| Sbjct 663113 AGAGTACGGCCATCTTCCAGCTGCTTACCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 663054 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || |||||| || || | | | |||||| ||||| | Sbjct 663053 ATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGATGGCTCGACT 662994 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||| || || | || ||||| || || ||||| Sbjct 662993 TCAAGAGTAATGGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 662947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422234719127012