Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq818 540 3e-149 seq1398 134 4e-27 >seq818 Length=58372 Score = 540 bits (598), Expect = 3e-149 Identities = 625/840 (74%), Gaps = 4/840 (0%) Strand=Plus/Plus Query 26601 GGCTTTGTTGAATAAATCAGATTTCGGGTAAGTCTCCCC-CGTAGCGGGTTGTGTTTTCA 26659 ||||||||||||||| || ||||| | || | || | ||| | | || | ||| Sbjct 42253 GGCTTTGTTGAATAATTCGGATTTAGATAAAAGCGCCTCTCGTCACTGATT---TCCTCA 42309 Query 26660 GGCAATACGCACGCTTTCAGGCATACCTGCTTTCGTCATTTTGTTCAGCGCTCGTACCAG 26719 |||||| ||||| ||||| ||||| ||||| |||||||||||| | || || | || Sbjct 42310 GGCAATCCGCACACTTTCTGGCATCCCTGCACGCGTCATTTTGTTTAAGGCACGGATCAT 42369 Query 26720 GGCCATAGCCTCTGCAACCTGACCATCGTAGTCACGCAGTGTCAGTGAACCCCCGAACAG 26779 |||||||| ||| ||||||| ||||||| || | || || || || || ||||| Sbjct 42370 GGCCATAGTTTCTCCAACCTGCGCATCGTAATCCCTCAACGTAAGATGCCCACCAAACAG 42429 Query 26780 CTGTTTTACCCGGTACATCGCCGTTTCCGCTATCGAGCGACGGTTGTAATCTGTTGTCCA 26839 ||||||||| ||||||||||||||||| || | || || ||||| ||| | || ||| Sbjct 42430 CTGTTTTACGCGGTACATCGCCGTTTCGGCCACTGAACGCCGGTTATAAGCCGTGTGCCA 42489 Query 26840 TTTCCACCGCGCATTACTCCCGGTCATTCGCTGATTAGCCACTGCACGGTTACGGTCTGC 26899 |||||| ||||| |||||||| | || || | ||||| || | || | ||| || Sbjct 42490 TTTCCAGTAAGCATTGCTCCCGGTAAGCCGTTGCCTCGCCACCGCCTGATTTCTGTCGGC 42549 Query 26900 ATATTCACCGGGCCAGTAACCCGCACCTTTTCGGGGAGGGATAAGCGCGCTGATTTTCTT 26959 ||| || | |||||||| || || | |||| || ||||||||||| | |||||||| Sbjct 42550 ATACTCCACCGGCCAGTAGCCGGCGCGCGTTCGCGGCGGGATAAGCGCCTTAATTTTCTT 42609 Query 26960 ACGCCGCAGTTCATCGTGACATAGCCGGGTATCGTAAGCGCCATCGGCGGCGGCTGACCT 27019 ||||||| || ||||| || || || || ||||| || ||||| ||| | ||| Sbjct 42610 GCGCCGCAACTCGTCGTGGCACCGCTTTGTGTCATAAGCCCCGTCGGCACAGGCGGCCCT 42669 Query 27020 GATTTTCCGGTGGGTTTGCCGGATTAACCCGGGGAAGGCCTCTGAGTCCGTAACGTTGTT 27079 |||||||| ||| || || ||||| | ||| ||||| ||||||| || || |||||||| Sbjct 42670 GATTTTCCTGTGCGTCTGACGGATAAGCCCCGGGAATGCCTCTGCATCAGTCACGTTGTT 42729 Query 27080 CAGCGACAGGTCAGCGCAGATGATTTCATGTGTTTTACTGTCAACGGCGAGATGCAGCTT 27139 || ||||||||||||||||| || ||||| || | | ||| || || || ||||| || Sbjct 42730 TAGGGACAGGTCAGCGCAGATAATCTCATGCGTATCAGCGTCCACCGCCAGGTGCAGTTT 42789 Query 27140 ACGCCAGATACGGCGGCGTTCCTGGCCATGCTTTTTGACTTTCCACTCGCCTTCACCGAA 27199 ||||||| ||||| ||||||||| || ||||| || |||||||| || |||||||| Sbjct 42790 CCGCCAGACGCGGCGCTTTTCCTGGCCGTGTTTTTTCACCTTCCACTCACCCTCACCGAA 42849 Query 27200 GACCTTCAGCCCGGTGGAATCAATTACCAGGTGTGCGATTTCACCCCGGGTGGGCGTTTT 27259 ||| || | ||||||||||| || ||||| || || |||||||| || || || |||| Sbjct 42850 GACTTTTAATCCGGTGGAATCGATAACCAGATGGGCAATTTCACCGCGTGTTGGGTTTTT 42909 Query 27260 GAAACTGACATTAACCGACTTTGCCCGCCTGCTGACACAGCTGTAATCCGGGCAGCGTAG 27319 |||| || | || || || |||||||||||||| ||| ||||||||||| || || Sbjct 42910 GAAAGGGATGCTGACGGATTTAGCCCGCCTGCTGACGCAGGAATAATCCGGGCAACGGAG 42969 Query 27320 CGGAACGTTCATCAGAGAAAAAATGGAATCAATAAAGCCCTGCGCAGCGCGCAGGGTCAG 27379 ||| | ||||| || | ||| ||||| ||||| || |||||||||||||| || || || Sbjct 42970 CGGGAGCTTCATTAGGGTAAAGATGGAGTCAATGAATCCCTGCGCAGCGCGAAGTGTGAG 43029 Query 27380 CCTGAATACGCGTTTAATGACCAGCACAGTCGTGATGGCAAGGTCAGAATAGCGCTGAGG 27439 | || |||||||| | | ||| || || | ||||| || |||||||| || || || Sbjct 43030 GCGAAAAACGCGTTTGAGCATCAGAACGGTGGAAATGGCCAGCTCAGAATAACGTTGCGG 43089 >seq1398 Length=15916 Score = 134 bits (148), Expect = 4e-27 Identities = 200/279 (72%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 4430 CGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTGAAGAG 4489 ||||| |||||| | ||||||||| || ||||| | || || || |||||| | Sbjct 13175 CGTGACCTGCTGAATTGGGGCCGCACCACCTCGAACGCCATCGAGTACGTCCGTGAACTG 13116 Query 4490 GTGTTTACCAATAACGCCGACGTGGTGGCAGAGAAA--GCACTGAAGCCAGAATCGGATA 4547 |||| || || |||||| | |||||| || ||| ||| ||||| | || |||| Sbjct 13115 CTGTTCACGAACAACGCCAATGTGGTG--AGCGAACTGGCAACCAAGCCTCAGTCCGATA 13058 Query 4548 TCACCTTC-AGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCATCA 4606 |||| ||| ||| | |||| |||| ||||||||| |||||| | | || || Sbjct 13057 TCACGTTCGAGCTGG-AGTCCGCACCCGTGGCGACCATCGCCCACTGGATTCGCGCTTCC 12999 Query 4607 CGTCAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATGTAC 4666 |||||| ||| ||| || || ||||| ||||| ||||| || |||||| |||||| Sbjct 12998 AAGCAGGTGCTGGCTGACGCCCCCATGCTGCAGTCGTACATCGACGGCCGCCTGATGTAC 12939 Query 4667 GGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGC 4705 |||||| |||||||||||| ||||||||||| ||| Sbjct 12938 GGCCTGAAGCTGAAGGAAGAGCAGCAGCTGCTGAAGGGC 12900 Score = 80.6 bits (88), Expect = 7e-11 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 2938 TTTGGCGTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCAACGAGCTGGGGATCGGGC 2997 ||||| || ||||| ||| | |||||| | |||||| || ||||||||||| | ||| Sbjct 14780 TTTGGTGTGCCGCCGCACATGGTCGGCCATTCCGAGAAGTCTACGAGCTGGGGCACCGGC 14721 Query 2998 ATCGAGCAGCAGAATCTCGGCTTCCTGCAGTACACCCTGCAGCC 3041 ||||||||||||| | ||||||||| | ||| |||| ||| Sbjct 14720 ATCGAGCAGCAGATGATTGGCTTCCTGACCTTCACGCTGCGGCC 14677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130274240473842