Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq1398 248 3e-61 seq1991 122 3e-23 >seq1398 Length=15916 Score = 248 bits (274), Expect = 3e-61 Identities = 378/530 (71%), Gaps = 15/530 (3%) Strand=Plus/Minus Query 3684 CTGGCGATAACCCGGACTCCACGATCACCATCTACGAGCCGATTGGCTACGACTGGTGGA 3743 ||| || | |||||| | | |||||||||||||||| | ||| ||| | |||||||||| Sbjct 14322 CTGCCGTTGACCCGGCCACATCGATCACCATCTACGACCAGATCGGCGAGGACTGGTGGA 14263 Query 3744 CCGGTGAAGGTGTCACGGCAAAACGCATTGCTGGCGCTCTGCGCTCCATCGGCAACGATG 3803 | |||||||| ||||| || ||||| || || || ||| |||||||| || | Sbjct 14262 CAGGTGAAGGCACTACGGCTAAGCGCATCAGCGGAGCCCTTCGCGCCATCGGCGACAAGC 14203 Query 3804 TCGATGTGACCGTGAACATCAACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTT 3863 || || || ||||||||||||| ||||||||||| ||||| |||||||| || | Sbjct 14202 ACGCC---ACGGTCTACATCAACAGCCCTGGCGGCGACGTGTTCGAGGGCCTGGCGATCT 14146 Query 3864 ACAACCTGCTGCGCGAGCACAAGGGCAAG-GTCACGGTGAACATCATCGGCCTGGCTGCC 3922 |||||||||||||||||||| || || | || || || || | ||||| |||| ||| Sbjct 14145 ACAACCTGCTGCGCGAGCACGCGG-CAGGCGTGACCGTCAAGGTGGTCGGCGTGGCGGCC 14087 Query 3923 TCTGCCGCCTCTTTCATCGCCATGGCGGGGGATGAAATCCGCATCGGCCGCGCCGCCTTC 3982 || || | ||||||||||||||||| | | | ||| |||| |||| Sbjct 14086 AGCGCGGCGGCGATCATCGCCATGGCGGGGTCGCGGGTGGAGGTTGCCCGAGCCGGCTTC 14027 Query 3983 CTGATGATCCATAACGCCTGG-CTGATCGCCATGGGTAATCGGAATGATCTCCGTGAGAT 4041 ||||||||||| || | ||| ||| | ||||| || |||| | | || | || |||| Sbjct 14026 CTGATGATCCACAATTCGTGGACTG-TGGCCATCGGCAATCAGCACGACATGCGCGAGAC 13968 Query 4042 AGCCGATTGGCTGGAGCCATTCGACATGACGCTGGCTGACATTTACGC-ACAGCGCACGG 4100 ||||| ||||||||||| ||||||| ||| | ||||| || | ||| || | ||| Sbjct 13967 CGCCGACTGGCTGGAGCCGTTCGACAAGACCCAAGCTGATATATTCGCGGCAAAGACCGG 13908 Query 4101 AAATCGACA---TCGACGACATCGTGAAACAGATGGACGCCGAGACCTGGATCGGCGGGC 4157 ||||| || | |||| || | ||||||| ||||| ||||||||||| | Sbjct 13907 ----CGACAAGCCTGAGAAGATCGCAAAGATGCTGGACGCTGAGACGTGGATCGGCGGCC 13852 Query 4158 GCGAAGCCGTCGACAAAGGGTGGGCAGATGCCTTCCTGGAGTCCGACGAG 4207 || || ||||||| |||| |||||| | | ||| | |||||||| Sbjct 13851 AGGATGCGGTCGACATGGGGTTCGCAGATTCGCTGCTGCCGGCCGACGAG 13802 >seq1991 Length=9072 Score = 122 bits (134), Expect = 3e-23 Identities = 127/164 (77%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGC- 48972 ||||| || |||||| |||| | |||||||||| || |||| | |||||||||||| Sbjct 5101 TGAAGATGCTGGCCAAGGAGCTGCAATGCCCGGTGATCGCGCTGTCGCAGCTCAACCGCT 5160 Query 48973 GGATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCC 49032 | || ||| ||| | || ||||| || || | |||||||| ||||| || |||||| Sbjct 5161 CGGTG-GAGCAGCGCACCGACAAGCGGCCCATGATGAGCGACCTGCGCGAATCGGGCGCC 5219 Query 49033 ATCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCGCGATGA 49076 |||||||| || ||||||||| | |||||| | |||||||| || Sbjct 5220 ATCGAGCAGGATGCGGACATCATCATGTTCATCTACCGCGACGA 5263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180431406966792