Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq98 100 3e-16 >seq98 Length=5729030 Score = 100 bits (110), Expect = 3e-16 Identities = 558/886 (63%), Gaps = 8/886 (1%) Strand=Plus/Plus Query 15908 AACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTT 15967 |||||||| || | ||| | |||||| | || ||||| || | ||| |||| Sbjct 2603132 AACACATTGTCAAGTCGATTGGCCATAACACCCCACTTCTGATACTCTCCTACTTTCTTC 2603191 Query 15968 TCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTT 16027 |||||||| || ||||| ||||| | ||||| ||||||||| ||| ||||| || Sbjct 2603192 TCAAAGAAGTTAGTTTTACCTTCAAGCGAAATGAACTCCATAAAACTAAAGGGATTCTTC 2603251 Query 16028 GAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATA 16087 | | || |||||| |||| || | || | || ||| ||||| ||||| ||| Sbjct 2603252 GTATTGTAAATCTTATCGATGACCAACTCGAGCAGCAGTCCATCAGCCACGAATTCAATA 2603311 Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147 ||||| || | ||||| ||||| || | | | ||| || | | || || | Sbjct 2603312 TACTGCGACAAAAGGTCACAATTCATGCCAAGCAGGTCAACCGGAAGGGTTTTCGTCAGG 2603371 Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGG 16206 || | | || || || | ||| ||| | || | || | | || | | || Sbjct 2603372 AATTCCTGTTTGATCAGGACTGTTTCGCGGATAAACTCGATCAC-ATGTTCTTGTGATGG 2603430 Query 16207 AGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCT 16266 | || | | ||| ||||| | | || |||| || |||| |||||||| | Sbjct 2603431 TTTCTGTACCAGATATTTGAACATAAGAGAAACAAATTCCATGTGCAGGCCTTCGTCACG 2603490 Query 16267 ACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAA 16326 || || |||| || ||||| || || ||| | ||||| || || || | |||| Sbjct 2603491 TGAGATCAATTCGTAGGAGAATGTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATT 2603550 Query 16327 TATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCG 16386 || | || || ||| ||||| || |||| || |||| || || || | || Sbjct 2603551 GATGGATGCGAAACTTCCACTGAAGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCG 2603610 Query 16387 CTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgttt 16446 || ||| | | ||||| ||| |||| || | | | | ||||| | || Sbjct 2603611 TTCTCCGAAGTTGGCCTTTTTGCTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTT 2603670 Query 16447 AACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAAT 16506 |||||| || || || || ||||| || || || | ||| |||| ||| ||| Sbjct 2603671 CACACAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAAT 2603730 Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566 ||||||||| || || | |||||||| || | || |||||||| || ||||| Sbjct 2603731 ATAAGTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAA 2603790 Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTA-CTTCAGAGTAAAACCTTTCTGCTAAGT 16625 ||||| ||||| | || |||| | || | || | | | ||| | ||| | | || Sbjct 2603791 TCCATAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA-CGTTCCACGAGGT 2603849 Query 16626 TTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttt 16685 | ||||| | | |||||| ||| |||| || || | || ||| || || | | Sbjct 2603850 TCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCT 2603909 Query 16686 tttCG--TTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTC 16743 | ||| | | || || ||| ||| || | | |||||| || | |||||| || || Sbjct 2603910 TCTCGCCTGACTTG--AGCTTTTCCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTC 2603967 Query 16744 TACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATG 16789 || ||||| | ||| || | |||| || ||||| | ||| ||| Sbjct 2603968 TATTGTCCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATG 2604013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462484497880200