Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq98 145 7e-30 seq4284 102 8e-17 seq4600 86.0 6e-12 >seq98 Length=5729030 Score = 145 bits (160), Expect = 7e-30 Identities = 536/827 (65%), Gaps = 12/827 (1%) Strand=Plus/Plus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 ||||| ||| || ||||| || | ||| | || ||||||||||||||||||||||| Sbjct 2603156 ATAACACCCCACTTCTGATACTCTCCTACTTTCTTCTCAAAGAAGTTAGTTTTACCTTCA 2603215 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATC-ACAACC 14019 || || || ||||||||| ||| ||||| | | | | | ||||| | ||| Sbjct 2603216 AGCGAAATGAACTCCATAAAACTAAAGGGATTCTTCGTATTGTAAATCTTATCGATGACC 2603275 Query 14020 TAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATT 14079 | | | | || | || ||| || | ||| |||||||| || |||| | |||||||| Sbjct 2603276 AACT-CGAGCAGCAGTCCATCAGCCACGAATTCAATATACTGCGACAAAAGGTCACAATT 2603334 Query 14080 CATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 14139 ||| || | || | || |||| | || || | ||||| | || || || | Sbjct 2603335 CATGCCAAGCAGGTCAACCGGAAGGGTTTTCGTCAGGAATTCCTGTTTGATCAGGACTGT 2603394 Query 14140 CTCGTTTATAATAATCG-TAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA 14198 ||| |||| | ||| | | | ||| | || || | | |||| ||| || | Sbjct 2603395 TTCGCGGATAA-ACTCGATCACATGTTCTTGTGATGGTTTCTGTACCAGATATTTGAACA 2603453 Query 14199 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 14258 | | | | |||| || || ||||| || || | || | ||||| || |||| Sbjct 2603454 TAAGAGAAACAAATTCCATGTGCAGGCCTTCGTCACGTGAGATCAATTCGTAGGAGAATG 2603513 Query 14259 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 14318 ||| || ||| ||| ||| || || || |||||| || | ||||| ||| | Sbjct 2603514 TTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATGGATGCGAAACTTCCACTGA 2603573 Query 14319 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14378 |||| ||| | || || | || || |||| | |||||||| || || |||||| Sbjct 2603574 AGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTTGC 2603633 Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 | || |||| || | | |||||| ||| || || | | | || | || || | Sbjct 2603634 TTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGG 2603693 Query 14439 CATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA- 14497 |||| || || | ||| | | ||| | | ||| || ||||| ||||| | || | Sbjct 2603694 CATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAAGTATCGATAAGCA-GCGAG 2603752 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC- 14556 ||||||||| ||| | ||||||||| || || ||||| ||||| || || | || || Sbjct 2603753 TACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCATAGAAGCAACGTGCCTCG 2603812 Query 14557 -TGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 ||||| || | ||| || | ||| | ||| | | || || || | | ||||| Sbjct 2603813 GTGACC--TGGAGCTCCTGGCTGAAA-CGTTCCACGAGGTTCTCGTTCATGCTGCCATCG 2603869 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT 14674 ||| |||| || ||||||| | | || |||| | ||| | |||| ||| Sbjct 2603870 GAAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTT 2603929 Query 14675 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14721 | ||||||||||| ||| ||||| ||||| ||||| || | |||||| Sbjct 2603930 TCCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCA 2603976 >seq4284 Length=891408 Score = 102 bits (112), Expect = 8e-17 Identities = 181/257 (70%), Gaps = 8/257 (3%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14531 |||||| ||||||||||| ||| | ||||||||| ||| | |||||||| || || | Sbjct 84834 AATGTAAGTATCAATAAG-CAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTT 84776 Query 14532 GAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACCT-CTGAGTAAAATCTTTCGG 14588 |||| || || || || | ||||| ||||| || |||| ||| | ||| | ||| Sbjct 84775 GAAATCCGTAGAAGCAACGCGCTTCGGTGACC--TGGACCTCCTGGCTGAAA-CGTTCCA 84719 Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14648 | | || || || || || ||||| ||| ||||| || |||| | | | || | Sbjct 84718 CAAGGTTCTCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCACATGTGAGATGA 84659 Query 14649 AGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14708 ||| | ||| | |||| |||| ||||||||| | ||| ||||| ||||| |||| Sbjct 84658 AGTGCTTCTCGCCGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAGAGAGATCGACTT 84599 Query 14709 CATCAACTGTCCAAAAA 14725 | || |||||||| ||| Sbjct 84598 CCTCTACTGTCCAGAAA 84582 >seq4600 Length=436310 Score = 86.0 bits (94), Expect = 6e-12 Identities = 175/253 (69%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14531 ||| || ||||| ||||| | || | ||||||||| ||| | ||||||||| || || | Sbjct 110506 AATATAAGTATCGATAAGCA-GCGAGTACATTTCACTGTGGACGTTTTCCATTGCAATTT 110564 Query 14532 GAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACCTC-TGAGTAAAATCTTTCGG 14588 |||| ||||| || || | || || ||||| || | ||| || | ||| | ||| Sbjct 110565 GAAATCCATAGAAGCAACGTGCCTCGGTGACC--TGGAGCTCCTGGCTGAAA-CGTTCCA 110621 Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14648 | | || || || | | ||||| ||| |||| || ||||||| | | || | Sbjct 110622 CGAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATGTGAGATGA 110681 Query 14649 AGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14708 ||| | ||| | |||| |||| ||||||||||| ||| ||||| ||||| |||| Sbjct 110682 AGTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAGATCGACTT 110741 Query 14709 CATCAACTGTCCA 14721 | || | |||||| Sbjct 110742 CCTCTATTGTCCA 110754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482316918524760