Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq810 742 0.0 seq265 320 6e-83 seq476 297 7e-76 seq888 114 4e-21 >seq810 Length=78467 Score = 742 bits (822), Expect = 0.0 Identities = 989/1344 (74%), Gaps = 34/1344 (3%) Strand=Plus/Plus Query 33313 GACTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAG 33372 ||||||||||| ||| ||| |||||| |||||| || ||| | |||| | | | Sbjct 43813 GACTGAACCGCCCCGACTTTCGCGGAGGCCGGTTGGCTTGAGTCAGGCTGGACTGGCCTG 43872 Query 33373 CGGCATTTCTGAGTTGTCTGTAGTAGTTTGCCTC-AGCTTCAGCGGGCGGGATATAGCCG 33431 || || ||| | |||||||| || || | ||| || ||||| | ||||| Sbjct 43873 GTGC---TCAAGATTG-CGATAGTAGTTGGCGTCGAACTTG-GCCGGCGGCACGTAGCCC 43927 Query 33432 AGCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCG 33491 ||||| ||||||||||||| | |||| |||| | ||||||||||| |||||||||||| Sbjct 43928 AGCGGGGCCATCAGCCGATGGTTGTTGAACCATGACACCCATTCCAGGGTTGCCAGTTCG 43987 Query 33492 ACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCG 33551 |||| ||||| || ||||| || || || ||||| |||| || | ||||||||| ||| Sbjct 43988 ACGGCTTCCCGGGTCTTCCAGGGCGCCCGGCGATGGATCAACTCGGCCTTGTACAGCCCG 44047 Query 33552 TTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCG 33611 |||||||| |||||||| || ||||| ||| ||||||| |||||| || || || ||| Sbjct 44048 TTGATCGTCTCGGCCAGGGCGTTGTCATAGGAGTCGCCCTTGCTGCCTACCGAAGGTTCG 44107 Query 33612 ATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCG 33671 ||||||||||| |||||||| ||| ||||||| |||||||||||||| || ||||||||| Sbjct 44108 ATGCCGGCCTCGGCCAGCCGCTCGGTGTAGCGGATGCTGACGTATTGCGATCCCCTGTCG 44167 Query 33672 GAATGATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAAGT 33731 || ||| | | | |||| | | || || || || ||||||| || || || || Sbjct 44168 GAGTGACACACGAGCGGACCGTGCGCACCAGGCTGCCGAGCGTACAAGGCCTGCTCCAGA 44227 Query 33732 GCATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGG 33791 ||||| || || |||||| ||| | ||| ||||||||||| || || || || Sbjct 44228 GCATCGAGCACGAAGTCCACCCGCATGCTGGTGCTCACCCGCCAGCCCACGATGCGCCGC 44287 Query 33792 GCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTA 33851 | |||||||||||||||||| ||||||||||||||||| ||||| |||||||| || || Sbjct 44288 GAGAACACGTCGATCACGAAGGCCACGTACAGCCAGCCCTGCCAGGTCGAGACGTATGTG 44347 Query 33852 AAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCC 33911 || || |||||| | ||| ||||| || | || |||||||||||||||| ||||| Sbjct 44348 AAGTCGCTCACCCACAACTGGTTCGGGCGCTGCGCACTGAACTGCCGGTTGACCAGGTCC 44407 Query 33912 AGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCG-AACACGCTTACCGCGAACTGC 33970 |||||| ||||| | ||||| ||||| ||||| | ||| ||| ||||| || | Sbjct 44408 TGCGGGCATGGCGCCCGCGCATCGCCGATCGTTGTGCGCATCAC-CTTGCCGCGCACAAC 44466 Query 33971 GCCACGCAAGCCC-TGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGC 34029 ||||||||| ||| ||| || ||||| || | || |||||||| ||||| | || Sbjct 44467 GCCACGCAACCCCATGCGGC-GCATCAGGCGCTCCACGGTGCAGCGCGCCACGCGCACGC 44525 Query 34030 CTTCCCGGTTCATCTGCTTCCAGACCT--TCGGCACGCCGTAGACCTGCATGTTGGCCTG 34087 |||| || | || || |||||||| |||| | ||||||||| ||| ||||||||| Sbjct 44526 CTTCACGTTGCAGTTGTCGCCAGACCTTGTCGG--CCCCGTAGACCCGCAGGTTGGCCTG 44583 Query 34088 CCAGACACGCTTGATCTCCGGTTGCAAAAGCTCATCGCGTTTCGCGCGGGCGCAGCGTTT 34147 ||| || | || ||| | || || || || || | || ||| ||| | | Sbjct 44584 CCACACCCTCTCGATGTGGGGCATCAGTTCCTGGTCTCGCTGGGCTCGGCCGCTGAGCAA 44643 Query 34148 CGACGGATCGCGAAGTTGTGCT-GCATGGCGTCGGTAGCCCGACGGGGCAATCCGCAAGA 34206 | | |||||| | | ||| || || || ||||| | || ||||| ||| ||| | Sbjct 44644 GGCAGCATCGCGCTGCCG-GCTGGCGTGCCGCCGGTACGCTGATGGGGCGATCTGCAGCA 44702 Query 34207 CCTTGCAGATCGGCTCGACCCCGAAGGTG-TCGCGATGCTGATCAATGAAGGCCTTCAGG 34265 | ||||||||||||||||||| | | || | ||| ||| | || | ||||| | || Sbjct 44703 GCCTGCAGATCGGCTCGACCCC-ATGCTGCTGGCGGTGCCGGTCCACAAAGGCGTACATC 44761 Query 34266 ACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCT 34325 |||| | |||||||||||||||||||| |||||||||||||| ||||| ||||| |||| Sbjct 44762 ACTTCAGCCGGCGGTCGAGCTCCGCCTGGGCGAAAAACGCGCTGGCCAGCTTGAGGATCT 44821 Query 34326 CGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCTTTGATGCGTTCACGCTCGG 34385 |||||| ||||| || || || |||||||||| | |||| ||| | ||||| Sbjct 44822 CGTTGGCACGGCGAAGCTCGCGCACTTCGCGCTCCAGTTCCTTGACGCGCTTGGCCTCGG 44881 Query 34386 CCGTACTCACGCCATCGCGCTCTCCACGGTCGACCTCGT--TG-CGCTTAACCCAATCCA 34442 |||| ||||||| ||||||| || ||| ||||| || ||| ||||| | || Sbjct 44882 CCGTGGTCACGCCTTCGCGCTGGCCCGTGTCACGCTCGTGCTGACGC---ACCCAGTTCA 44938 Query 34443 ACAGCGTCTGCGGCGTGCAGCCGATCAT--CGGCGCAATCGATTCGACGGCCGCCCACAT 34500 ||||||||| ||||||| ||||||| | ||||| ||||| |||| ||||||||| Sbjct 44939 GCAGCGTCTGTGGCGTGCTGCCGATCTTGCCGGCG--ATCGACACGACCGCCGCCCACTG 44996 Query 34501 CGACGGGTGCTC-GCTACGCTGCTCGCGTACCAGGCGCACTGCGCGCTCTCGGACTTCCG 34559 ||| || ||| ||| || |||||| |||| |||||| || ||||| || || | || Sbjct 44997 CGATTCGTACTCTGCT-CGGTGCTCGAACACCATGCGCACCGCACGCTCACGAACCTGCG 45055 Query 34560 GGGAAAACTGC-TTGGCTT-CTGTTCATGGCTCCATTCTCTCAGA-GTTGGAGCCTCCAC 34616 | ||||||| | || ||| || | |||||||||| ||||| | | ||||||||| | Sbjct 45056 GCGAAAACTTCACTGACTTCCTCATGATGGCTCCATCTTCTCAAACGAGGGAGCCTCCGC 45115 Query 34617 -AAACTCGGGGCGGTTCAGACAGC 34639 ||| |||||||||||||| |||| Sbjct 45116 GAAAGTCGGGGCGGTTCAGCCAGC 45139 >seq265 Length=448903 Score = 320 bits (354), Expect = 6e-83 Identities = 411/559 (74%), Gaps = 16/559 (3%) Strand=Plus/Plus Query 22927 CCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATCCCGCGCTTT 22986 |||||| |||||||||| || ||||| ||||| || || | || ||| | ||| || Sbjct 64454 CCCATTGTTCCCTGGATTGGGGGCAAACGTCGCCTGGCAAAACATATCCTGCCGTTATTC 64513 Query 22987 CCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTACTTCATGC-G 23045 ||||||||| ||||| |||||| |||| |||| ||||||||||||||| || | Sbjct 64514 CCGAAGCACACATGTTATGTCGAGCCGTTCTGCGGCGCGGCGGCGCTGTACTTTTTGAAG 64573 Query 23046 ACCGCCAGCCAGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCG 23105 | ||||| || ||||||||||||||| || ||||| ||| | |||||||||||||| Sbjct 64574 GCTCCCAGCAAGAC-CGAGGTGATCAACGACATTAACGGTGAGTTAGTGAACCTGTATCG 64632 Query 23106 CGTCGTTCAGCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCG 23165 ||| || |||| || || |||||||| ||||| |||||||| ||||||||| ||||| Sbjct 64633 CGTGGTCAAGCATCACCTGGAAGAGTTTGTGCGGCAGTTCAAGTGGGCGCTGGTCAGCCG 64692 Query 23166 GCAGGTGTTCGAGTGGCTGAAGCATACGGTCCCG---GAAACCCTCACCGACATCCAGCG 23222 ||| | | |||||||| || || |||| |||||||| ||||| |||||||| Sbjct 64693 CCAGATTTATAAGTGGCTGCAGGCCAC---CCCGGAAGAAACCCTGACCGATATCCAGCG 64749 Query 23223 TGCGGCACGCTTCTACTACCTGCAAAA--AAGTTGCTTTGGCGGGAAGCTTGAAGGGCAG 23280 ||| || || ||||| |||||||| || ||| ||| ||||| ||| | | | |||| Sbjct 64750 TGCAGCCCGGTTCTATTACCTGCAGAAGCAAG--CCTTCGGCGGCAAGGTGGCTGAGCAG 64807 Query 23281 ACGTTCGGAACGGCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGCATCGAAGAAGAG 23340 ||||| || |||| || | | ||| | | |||||||||||||| ||||| ||| Sbjct 64808 ACGTTTGGGGTATCGACCACCAGTGCGCCCCGTTTCAACCTGCTGCGCATTGAAGAGGAG 64867 Query 23341 CTATCGGCGGCGCACATTCG--TCTCGCGAATGCGTACATCGAGCGGCTCGATTGGGCGA 23398 | ||| ||||||| | || | || || | || ||||||| | || ||||| | Sbjct 64868 TTGTCGATGGCGCACCTGCGGTTATCACGCA--CGCTGATCGAGCATATGGACTGGGCCA 64925 Query 23399 CCTGCATCGATCGTTACGATCGGCCGCACACGCTGTTCTACCTTGATCCGCCGTACTTCG 23458 |||||||| || || |||||||| ||||| ||||||||| || |||||||| | | Sbjct 64926 CCTGCATCCGGCGCTATGATCGGCCCCACACCCTGTTCTACTGCGACCCGCCGTATTGGG 64985 Query 23459 AGACTGAAGGGTACGGCGT 23477 || ||||| || ||||| Sbjct 64986 GCACGGAAGGTTATGGCGT 65004 >seq476 Length=182463 Score = 297 bits (328), Expect = 7e-76 Identities = 482/687 (70%), Gaps = 14/687 (2%) Strand=Plus/Plus Query 22927 CCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATCCCGCGCTTT 22986 || || || || ||||||||||||||||| || || || | ||| | | |||| |||| Sbjct 143861 CCGATCATCCCGTGGATCGGCGGCAAGCGCCGGCTGGCGAAGCACCTGCTGCCGCTCTTT 143920 Query 22987 CCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTACTTCATGCGA 23046 || ||||| | || ||||||||| |||| || | ||| ||||||| ||||||| | Sbjct 143921 CCCGAGCACCAGTGCTACGTCGAGCCGTTCTGCGGAGCGGCCGCGCTGTTCTTCATGAAA 143980 Query 23047 CCGCCAGCCAGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCGC 23106 || |||| | || ||| ||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 143981 CCTCCAGTGAAGGCCGAAGTGATCAACGACATCAACGGCGAGCTGGTGAATCTGTACCGC 144040 Query 23107 GTCGTTCAGCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCGG 23166 || || ||||| | |||||||| ||||||| |||| ||| | |||| || Sbjct 144041 GTGGTGGCCAACCATTTGACTGAGTTCGTTAAGCAGTTCAGATGGTCGCCGGTGAGCAGG 144100 Query 23167 CAGGTGTTCGAGT-GGCTGAAGCATACG--GTCCCGGAAACCCTCACCGACATCCAGCGT 23223 || | || ||| ||| | ||| || || ||| ||| || || || ||||| Sbjct 144101 CAAATCTTTAAGTGGGCCGTAGCCGCCGAAGTAGCGG---GCCTTACGGATATTCAGCGC 144157 Query 23224 GCGGCACGCTTCTACTACCTGCAAAAAAGTTGCTTTGGCGGGAAGCTTGAAGGGCAGACG 23283 || || || ||||||||||||||| | |||||||||| | |||||||| Sbjct 144158 GCTGCGCGGTTCTACTACCTGCAACGGCTTGGCTTTGGCGGCGTCGTCGAAGGGCACCGC 144217 Query 23284 TTCGGAACGGCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGCATCGAAGAAGAGCTA 23343 ||||| || | || || |||| | | | |||| ||| ||||||| || || || || Sbjct 144218 TTCGGCACCTCAACAACAACGGGGGTGCGGCTGAGTCTGATGCGCATTGAGGAGGATCTG 144277 Query 23344 TCGGCGGCGCACATTCGTCTCGCGAATGCGTACATCGAGCGGCTCGATTGG-GCGACCTG 23402 |||||||| || |||| | ||| ||| || |||| ||||| ||| ||| || Sbjct 144278 TCGGCGGCACATCTTCGCTTGGCGCGGGCGACGATTGAGCACCTCGACTGGCACGA-GTG 144336 Query 23403 CATCGATCGTTACGATCGGCCGCACACGCTGTTCTACCTTGATCCGCCGTACTTCGAGAC 23462 |||| || ||||| ||||| ||||||||||||||| |||||||| |||| | || Sbjct 144337 CATCACCCGCTACGACCGGCCCCACACGCTGTTCTACTGCGATCCGCCTTACTGGGGCAC 144396 Query 23463 TGAAGGGTACGGCGTCGCATTCCCTTTCACGGAGTACGAGAAGATGGCCGAGCGGCTGCG 23522 |||||||||||||| | ||| | |||||||| ||||||||||| | || Sbjct 144397 CGAAGGGTACGGCGTGGAGTTCGGACTGGGTGAGTACGACCGGATGGCCGAGCTGGCCCG 144456 Query 23523 GTCGATCAAGGGGCGCGCGATCGTCAGC---CTCAACGACCATCCGGAGATCCGGCGCGT 23579 | |||||||||| || ||| || | | | || ||| ||| ||||| || |||| Sbjct 144457 GACGATCAAGGGCCG---GATGGTGATCTCGGTGAATGACATTCCCGAGATGCGTCGCGC 144513 Query 23580 GTTCGCCGGTTTCCATATCGAGAGCGT 23606 |||| ||| | | || ||| |||| Sbjct 144514 CTTCGACGGCCTGCGGATGGAGCGCGT 144540 >seq888 Length=58548 Score = 114 bits (126), Expect = 4e-21 Identities = 132/174 (76%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 34186 CCGACGGGG-CAATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGC 34244 ||||||||| | | | ||||||||||||| ||| |||||||| ||| ||||| ||| Sbjct 25804 CCGACGGGGGCTACCTGCAAGACCTTGCATGGCGGATCGACCCCACAGGCATCGCGGTGC 25745 Query 34245 TGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACG 34304 || || | ||| | | || || || | ||||| ||||||||| |||| ||| |||||| Sbjct 25744 TGGTCGACGAAAGACCTCGCGATTTCCATCGGCGATCGAGCTCCACCTGGGCG-AAAACG 25686 Query 34305 CGCTCGCCAGTTTGAGA-ATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGC 34357 | || | ||| || | | ||||| |||| ||||| | |||||||| ||||||| Sbjct 25685 CACTGGTCAGCTTCATATATCTCATTGGCCCGGCACCATTCCTTGAACTCGCGC 25632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170662358845390