Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4280 428 6e-115 seq98 187 3e-42 seq4600 152 6e-32 seq4284 104 3e-17 >seq4280 Length=912600 Score = 428 bits (474), Expect = 6e-115 Identities = 876/1291 (68%), Gaps = 27/1291 (2%) Strand=Plus/Minus Query 62627 ATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTA 62686 ||| || || || | || ||||| || || | || ||| || || ||||| ||||| || Sbjct 357167 ATAGGTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGGCACCATA 357108 Query 62687 ATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATA 62746 || || ||||| ||||| | || ||| || | ||| ||||| ||| || | ||||| Sbjct 357107 GTAGATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTGTCGTAAGGATA 357048 Query 62747 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 | | | ||| || || || || | ||| || ||||| || ||||| || | || | Sbjct 357047 ACGCATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGGCG 356988 Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 | |||| || | || ||||| | ||||| ||||||| || || ||||| ||||| Sbjct 356987 CATATTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTTTGTTGAG 356928 Query 62867 ATTTCT---GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC 62923 ||| | | ||||| |||| | || || |||||||| | |||||| || | || Sbjct 356927 ATTCTTAGTGGCAATT--TTTG-CTACTTCTTTCAGTTTTTGGAAATCATATGTCTTGTC 356871 Query 62924 ---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT--TA 62978 | | || |||||||||||||| | || || || ||||| || || | |||| | Sbjct 356870 GGGTTTCACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTTCATCCTT 356811 Query 62979 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 | | | |||| | || || |||||||| || |||||||| ||||| | || Sbjct 356810 GGAGGAG--TATTCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCCGATGTTC 356753 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 || |||||||| || |||| || ||||||||||| || ||| | ||| ||| ||||| Sbjct 356752 TGCTGATTACTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACCGGTTTCC 356693 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC-T 63157 | || || || || || || ||| | || | || || | | | |||||| | Sbjct 356692 ACTTGGGACTCGATGATTGCAAACCACAAATCTTGGGCTTTCACTTTCCGAATGTATCGT 356633 Query 63158 CCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 63217 |||| | ||| ||||| || |||| | ||| ||||| || ||||| |||| | Sbjct 356632 CCTTCCGCTT-CGTATGATGTGTACAGTTTTTCAAACTCCTCACCCCATG---TGTCGGA 356577 Query 63218 T---CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63274 | | ||||||||||| || |||||||| |||| ||| ||| | ||| |||||| || Sbjct 356576 TAGCCCAGGACATTCATGAGGGCACATCAAGCACCAGTCTTCGTTAGCCTCCACTCGCTT 356517 Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT---ATGTTCCTC 63331 ||| || | ||| ||||||||||| || || | || || | || || ||| | Sbjct 356516 CATGAACAAATCCGGAATCCAAAGCGCGTAGAACATGTCCCTGGCTCGGACATCTTCAGC 356457 Query 63332 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63391 | || || ||||| || | ||| |||||| | | || ||| |||||||||||| | Sbjct 356456 G---CCGGTGTTCTTCTTTAAATCCAGGAACTCGAAAACATCGCCATGCCACGGTTCGAG 356400 Query 63392 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63451 || ||||| | | || ||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 356399 ATAAATGGCAAAGGCACCTGGCCGCTTGTTACCTCCCTGATCAACGTACTTGGCAGTGTT 356340 Query 63452 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 ||| || || |||||||| ||||| | |||||| || || || || || || | || || Sbjct 356339 ATTGTACACCCTCAACATGGGAATCAAACCGTTGGAAATTCCGTTCGTGCCAGCAATGTA 356280 Query 63512 GCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63571 | ||| | || | || | || || || ||||| || ||| ||| || || Sbjct 356279 GGTTCCCTTTGCTCTGATGCAATGAACATTCAGGCCGATTCCTCCAGCCGATTTCGAAAT 356220 Query 63572 TAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAG 63631 || || || | || || ||||| ||||| || || ||||| || ||| ||||| | | Sbjct 356219 CAACGCACACTGCTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGCTCATGGTCAA 356160 Query 63632 TAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63691 || || ||| |||| || | || || |||| ||| | || || ||||| Sbjct 356159 CAGGAAGCAGGACGACAGCTGAGGTCGGCAGGTGGCCGCCGCAAACATCGTTGGCGAAGC 356100 Query 63692 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63751 || || || || | || || || | ||||||||||||||| || | ||| ||||| Sbjct 356099 ATGAGTGAAATATCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGCGTCGATATCTTC 356040 Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 || ||||| | || || ||||| ||||||||||| || | ||| || || ||| Sbjct 356039 GCCGTGGATTCCAATGGCAACCCGCATCAACATGTGCTGTGGCCGTTCCACGATCTTGCC 355980 Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63871 || || || | ||| || ||| ||||| || || || || |||||||| || ||| Sbjct 355979 TTTGATCTTGAGCAAATACGATCGTTCCAGCGTCTTGAAGCCGAAATAGTTATAGCCAAA 355920 Query 63872 GTCTCGTTCGTAAATAATAACCGAATTGAGC 63902 ||| || |||||||| ||| ||||||| ||| Sbjct 355919 GTCCCGATCGTAAATGATAGCCGAATTCAGC 355889 >seq98 Length=5729030 Score = 187 bits (206), Expect = 3e-42 Identities = 578/887 (65%), Gaps = 13/887 (1%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||| ||| || || || || || || || || || || |||||||| ||||| Sbjct 2603155 CATAACACCCCACTTCTGATACTCTCCTACTTTCTTCTCAAAGAAGTTAGTTTTACCTTC 2603214 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 | || || ||||| ||| ||| ||||| | ||||||||| || | | | Sbjct 2603215 AAGCGAAATGAACTCCATAAAACTAAAGGGATTCTTCGTATTGTAAATCTTATCGATGAC 2603274 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 ||| || | || || ||| || |||||||| ||||| || | |||||||| Sbjct 2603275 CAACTCGAGCAGCAGTCCATCAGCCACGAATTCAATATACTGCGACAAAAGGTCACAATT 2603334 Query 33458 CATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 ||| || | || | ||| ||||| | || || ||||| |||| || || | Sbjct 2603335 CATGCCAAGCAGGTCAACCGGAAGGGTTTTCGTCAGGAATTCCTGTTTGATCAGGACTG- 2603393 Query 33518 ATTT----GTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAA 33573 ||| | || | | ||| | | ||||| ||| |||| | || ||| | Sbjct 2603394 -TTTCGCGGATAAACTCGATCACATG--TTCTTGTGATGGTTTCTGTACCAGATATTTGA 2603450 Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| | | | | || || |||||| || ||||| | || ||||||| || | Sbjct 2603451 ACATAAGAGAAACAAATTCCATGTGCAGGCCTTCGTCACGTGAGATCAATTCGTAGGAGA 2603510 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || || ||| | || |||||||| || | |||| ||||| ||||| ||| Sbjct 2603511 ATGTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATGGATGCGAAACTTCCAC 2603570 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 ||||| ||| |||| || | || ||||| | | | ||||| | ||| | | Sbjct 2603571 TGAAGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTT 2603630 Query 33754 --CATGTAT-CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | || || ||| || | | | || || ||||| || ||||| |||| | || | Sbjct 2603631 TGCTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACACAGGGCAGATTATCGA 2603690 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 ||||||| || | || | ||| || ||| || |||||||||||| | || Sbjct 2603691 TGGCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAAGTATCGATAAGCAGCG 2603750 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||||||| || | |||||| || ||||| |||||||| ||||| || | |||| Sbjct 2603751 AGTACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCATAGAAGCAACGTGCCT 2603810 Query 33931 CGGTAATCTGCA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| | ||| | || ||| ||| ||||| | | || || |||| | ||||| Sbjct 2603811 CGGTGACCTGGAGCTCCTGGCTGAAA-CGTTCCACGAGGTTCTCGTTCATGCTGCCATCG 2603869 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 || |||| || |||||||||||| || || | || ||| ||| | || || Sbjct 2603870 GAAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTT 2603929 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | |||||| | ||||||||| | ||| ||||| || | |||||| | ||||||||| Sbjct 2603930 TCCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCAGAGAGATGCCTCT 2603989 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 |||| || ||||| | ||| ||| ||||||| ||||| |||||||| Sbjct 2603990 GCCTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAAAAT 2604036 >seq4600 Length=436310 Score = 152 bits (168), Expect = 6e-32 Identities = 264/381 (69%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 33777 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 33836 || || ||||| || ||||| |||| | || |||||||| || | || | ||| Sbjct 110435 TCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGT 110494 Query 33837 TTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 33896 || ||| || |||||||||||| | || |||||||| || | |||||| Sbjct 110495 TTGGAATCACGAATATAAGTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCC 110554 Query 33897 ATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA-CTTCTGTACAAAA 33955 || || || |||||||| ||||| || | |||||||| | ||| | || ||| ||| Sbjct 110555 ATTGCAATTTGAAATCCATAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA 110614 Query 33956 TCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATG 34015 ||||| | | || || |||| | ||||| || |||| || ||||||||||| Sbjct 110615 -CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATG 110673 Query 34016 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 34075 | || || | || ||| ||| | || || | |||||| | ||||||||| | Sbjct 110674 TGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAG 110733 Query 34076 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 34135 ||| ||||| || | |||||| | ||||||||||||| || ||||| | ||| ||| | Sbjct 110734 ATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCC 110793 Query 34136 ATGATATTGGATTGGGAAAAT 34156 |||||| ||||| |||||||| Sbjct 110794 ATGATACTGGATGGGGAAAAT 110814 >seq4284 Length=891408 Score = 104 bits (114), Expect = 3e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 |||||||| || | || |||||||| || | ||||| || || || |||||| Sbjct 84830 TAAGTATCAATAAGCAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTTGAAAT 84771 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 |||||||| || | || ||||| | ||| || || | || ||||| | | || Sbjct 84770 CCGTAGAAGCAACGCGCTTCGGTGACCTGGACCTCCTGGCTGAAACGTTCCACAAGGTTC 84711 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 34031 || ||||| || ||||| || ||||| || |||| |||||| || || | || Sbjct 84710 TCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCACATGTGAGATGAAGTGCTTC 84651 Query 34032 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 34091 ||| | | | || || | |||||| | ||||||||| | ||| ||||| || ||| Sbjct 84650 TCGCCGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAGAGAGATCGACTTCCTCTACT 84591 Query 34092 GTCCAAAATGATGCCTCTGCCT 34113 ||||| || ||||||||||||| Sbjct 84590 GTCCAGAAAGATGCCTCTGCCT 84569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629780149470960