Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq3471 111 6e-20 >seq3471 Length=5556 Score = 111 bits (122), Expect = 6e-20 Identities = 232/340 (68%), Gaps = 7/340 (2%) Strand=Plus/Minus Query 21306 GCTTTCATCTCGGCCGCGTTCGCCGCCTCGCCGGCGATATCCTCGATTTCGCGCGTTTTC 21365 ||||||||||| || ||||| || || || || |||||||| ||||| | ||| || Sbjct 4035 GCTTTCATCTCAGCGGCGTTTGCAGCTTCTCCAGCGATATCTTCGATAACTCGCTCAGTC 3976 Query 21366 AGATTGCCCTTGCGGACCTGCTGGATGAACCGGGCCTTAGCCTCGATCGTCTGCCACGTC 21425 ||| || || |||| ||| | || ||| || || | ||||| ||||||||| | Sbjct 3975 AGAGATCCATTACGGAACTGTTCTATAGCCCGTGCTTTTACTTCGATAGTCTGCCACATA 3916 Query 21426 CGCGCATCGAGCGTGTTC--TTGGTGGCAT-AGCGCAATATCTCGATCTCGAAGCCATCC 21482 || || || ||||| | ||||||| |||| |||||||| | ||||| |||| Sbjct 3915 CGTGCGTC--ATATGTTCGTTCAGTGGCATAAGCG-AATATCTCAACTTCGAAATTATCC 3859 Query 21483 GGATCTTCGGCATAGAGCTCGTTGCCCTGCCGGATGCCGCGCCCGTCGCGTTGCTCAAGG 21542 ||||| || ||| | || || |||||||| || |||| ||||| || | | Sbjct 3858 TTATCTTGTTCAAAGAACATATTACCTTGCCGGATAATACGTCCGTGTCGTTGTTCTAAG 3799 Query 21543 TCGGACGGCCGCCACGGCGCATCGATGTGATGCAGCGCGACGAGGCGGTTTTGGACGTTG 21602 || |||| ||| || ||| | || |||||| || | |||| ||| ||||| Sbjct 3798 TCTCGTGGCCTCCAGGGACAATCTAGGTCATGCAGTGCCGTTAAGCGGCGTTGAACGTTT 3739 Query 21603 GTACCGGCGCCCATCTTCGGCGTCGAGCCGAACAGGAACC 21642 || || || |||||||| || ||||||| || ||||| Sbjct 3738 GTTCCAGCTCCCATCTTGAAAGTTGAGCCGATCA-GAACC 3700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183599228008452