Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq98 156 4e-33 seq4280 145 7e-30 seq4284 132 5e-26 seq4600 93.3 4e-14 >seq98 Length=5729030 Score = 156 bits (172), Expect = 4e-33 Identities = 573/886 (65%), Gaps = 15/886 (2%) Strand=Plus/Plus Query 11327 AACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTC 11385 |||||||| ||| ||||| || | ||| || | || || || ||||| |||||||| Sbjct 2603158 AACACCCCA--CTTCTGATACTCTCCTACTT-TCTTCTCAAAGAAGTTAGTTTTACCTTC 2603214 Query 11386 TAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTC-ACAAC 11444 || || || |||||||||| ||||| ||||| | |||| | | || || | || Sbjct 2603215 AAGCGAAATGAACTCCATAAAACTAAAGGGATTCTTCGTATTGTAAATCTTATCGATGAC 2603274 Query 11445 CTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAAT 11504 | ||||| | | || ||| || |||||||| |||||||| |||| | ||||| Sbjct 2603275 C-AACTCGAGCAGCAGTCCATCAGCCACGAATTCAATATACTGCGACAAAAGGTCACAAT 2603333 Query 11505 TCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCG 11564 |||| || | || || ||||||| | |||| || |||| || || || | Sbjct 2603334 TCATGCCAAGCAGGTCAACCGGAAGGGTTTTCGTCAGGAATTCCTGTTTGATCAGGACTG 2603393 Query 11565 CATCAATGATTA--TCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAA 11622 || ||| | |||| | | | ||| | |||||| |||| | || ||| || Sbjct 2603394 TTTCGCGGATAAACTCGA--TCACATGTTCTTGTGATGGTTTCTGTACCAGATATTTGAA 2603451 Query 11623 CATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAA 11682 ||| | | | |||| || || | |||||||| | || | ||| | || || Sbjct 2603452 CATAAGAGAAACAAATTCCATGTGCAGGCCTTCGTCACGTGAGATCAATTCGTAGGAGAA 2603511 Query 11683 TGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGA 11742 ||||| || ||| ||| ||| || || || | |||| || | || || ||| Sbjct 2603512 TGTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATGGATGCGAAACTTCCACT 2603571 Query 11743 AAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTGTT 11799 ||||| ||| | |||||| | || || ||||| || | |||||| | |||| || Sbjct 2603572 GAAGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTT 2603631 Query 11800 GCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTAT 11859 ||| || |||| || | | | ||||||||||| || || || || | || || Sbjct 2603632 GCTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACACAGGGCAGATTATCGAT 2603691 Query 11860 AGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACT 11919 || || || || | | ||| | | ||| | | ||| ||||| || || | | Sbjct 2603692 GGCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAAGTATCGAT-AAGCAGCG 2603750 Query 11920 A-TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 | |||||||| || | |||||||| || ||||||||||||||||| || ||||||| Sbjct 2603751 AGTACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCATAGAAGCAACGTGCCT 2603810 Query 11979 CTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 | | ||| | ||| || | |||| | | ||||| || | | ||||| Sbjct 2603811 CGGTGACCTGGAGCTCCTGGCTGAAACGTTCCACGAGGTTCTCGTTCATGCTGCCATCGG 2603870 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT 12098 || |||| || || | || |||| || |||| || ||| || | | || | Sbjct 2603871 AAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTT 2603930 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTG 12158 ||||||| ||| |||||| || | ||| ||||| || | ||||| | | |||| ||| Sbjct 2603931 CCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTG 2603990 Query 12159 ATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAAT 12204 | || ||||| | ||| || ||||||||| || |||||||| Sbjct 2603991 CCTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAAAAT 2604036 >seq4280 Length=912600 Score = 145 bits (160), Expect = 7e-30 Identities = 798/1260 (63%), Gaps = 21/1260 (2%) Strand=Plus/Minus Query 37302 CCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACT 37361 ||||||||| | |||||||| | || ||||||||| || || |||| || || || Sbjct 357242 CCAATCCCACATGTCTGTTGGCTCTTTGTTCCACATATCGTACTGCAGAACTCCCTTGCT 357183 Query 37362 CGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGA 37421 | | ||| | | ||| || || || | || | ||| || | ||| || || | Sbjct 357182 CACCGGACATCCCGGATAGGTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGC 357123 Query 37422 TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTC 37481 ||||| || |||| || || |||||||| ||||| ||| | | ||| |||||||| Sbjct 357122 TTCTAAGGCACCATAGTAGATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTC 357063 Query 37482 GCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACC 37541 ||| ||| | | ||| | || || || || |||| |||| ||||| |||||||| || Sbjct 357062 GCTGTCGTAAGGATAACGCATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCC 357003 Query 37542 TATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATC 37601 || || | || | |||| |||| | ||| ||||||||| |||| || || Sbjct 357002 GATCGGGCGGTGGCGCATATTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTC 356943 Query 37602 TATTATTTTATTTAGATTTTTAACTAGTATTTTCG-TAATTATTCTCAACTTGTCGAA-- 37658 || ||||| || ||||| ||| ||||| | || || || ||| || | ||| Sbjct 356942 GATGATTTTGTTGAGATTCTTAGTGGCAATTTTTGCTACTTCTT-TCAGTTTTTGGAAAT 356884 Query 37659 CATAAAT-ACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAG 37717 |||| | || || || || | |||| | || || |||| ||||| |||| Sbjct 356883 CATATGTCTTGTCGGGTTTCACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAG 356824 Query 37718 CAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTG 37777 ||| |||||| | | ||| | ||| || || || || || | | || | Sbjct 356823 CAATTTCATCCTTGGAGGAGTATTCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGG 356764 Query 37778 TTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCG 37837 |||| | || ||||| ||| | || |||| ||| ||||| || || ||||| Sbjct 356763 TTCCGATGTTCTGCTGATTACTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAA 356704 Query 37838 TTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT--GCTTTAACGAT 37895 || ||| | ||| | |||||| || | ||| ||| |||| ||||| || | Sbjct 356703 CACCGGTTTCCACTTGGGACTCGATGATTGCAAACCACAAA--TCTTGGGCTTTCACTTT 356646 Query 37896 CGCTTTAAttttt--ttCTT-TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCC 37952 | ||| | | | ||| | ||||||| | | || | ||| | ||| || | || Sbjct 356645 C---CGAATGTATCGTCCTTCCGCTTCGTATGATGTGTACAGTTTTTCAAACTCCTCACC 356589 Query 37953 CCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTT 38012 |||| ||| ||| || |||||||| || ||||| | |||| ||||| | Sbjct 356588 CCATGTGTCGGATAGCCCAGGACATTCATGAGGGCACATCAAGCACCAGTCTTCGTTAGC 356529 Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTC 38071 || || || | ||| || ||||| || | ||| | || ||| || | || ||| || Sbjct 356528 CTCCACTCGCTTCATGAACAAATCCGGAATCCAAAGCGC-GTAGAACATGTCCCTGGCTC 356470 Query 38072 TATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCC 38131 ||||| || ||||| |||| || || ||||| | ||| | |||| Sbjct 356469 GGACATCTTCAGCGCCGGTGTTCTTCTTTAAATCCAGGAACTCGAAAACATCGCCATGCC 356410 Query 38132 ATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATC 38191 | ||||| | |||||| | | || ||||| | || | ||||||||||| || || Sbjct 356409 ACGGTTCGAGATAAATGGCAAAGGCACCTGGCCGCTTGTTACCTCCCTGATCAACGTACT 356350 Query 38192 TAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC 38251 | | |||||||| || | || ||||| || | | ||| || || | ||||| | | Sbjct 356349 TGGCAGTGTTATTGTACACCCTCAACATGGGAATCAAACCGTTGGAAATTCCGTTCGTGC 356290 Query 38252 CGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCAT 38311 | | || || || ||||| |||| || | | || || ||||| || || Sbjct 356289 CAGCAATGTAGGTTCCCTTTGCTCTGATGCAATGAACATTCAGGCCGATTCCTCCAGCCG 356230 Query 38312 GTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCT 38371 ||| || || || || || || || || || || | || || || || ||||| || Sbjct 356229 ATTTCGAAATCAACGCACACTGCTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGC 356170 Query 38372 TTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTT--CCGGCGTTAAATAA 38429 | || | | | || || |||| ||||| | || | ||| || ||| | Sbjct 356169 TCATGGTCAACAGGAAGCAGGACGACAGCTGAGG-TCGGCAGGTGGCCGCCG-CAAACAT 356112 Query 38430 TGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATC 38489 || || || ||||| |||| || | ||||||| |||| || || || || || | Sbjct 356111 CGTTGGCGAAGCATGAGTGAAATATCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGC 356052 Query 38490 ATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || ||||| ||||||| || || | | |||| ||| | ||| || ||||| | ||| Sbjct 356051 GTCGATATCTTCGCCGTGGATTCCAATGGCAACCCGCATCAACATGTGCTGTGGCCGTTC 355992 >seq4284 Length=891408 Score = 132 bits (146), Expect = 5e-26 Identities = 262/387 (68%), Gaps = 3/387 (1%) Strand=Plus/Minus Query 11461 TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATC 11520 |||||| || |||||||| |||||||| ||||| | ||||||||| || | || || Sbjct 85537 TCTATCAGCCACGAATTCAATATACTGCGACATAAGGTCACAATTCATGCCAAGCAGGTC 85478 Query 11521 CACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGA 11580 ||||||| || |||| ||||||| ||| || || || || ||| ||| Sbjct 85477 AACCGGAAGGGCTTTCGTCAGGAACTCCTGTTCGATCAGGACTGCTTCGCGGATAATCTC 85418 Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATC 11640 | | | ||| | |||||| |||| | || ||| ||||| | ||| ||||| || Sbjct 85417 GATCACACGTTCTTGTGATGGTTTCTGTACCAGATATTTGAACATAAGACAAGCAAAGTC 85358 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700 || | |||||||| | || | ||| || || ||||||| || ||||||| Sbjct 85357 CGTGTGCAGGCCTTCGTCACGTGAGATCAATTCGTTGGAGAATGTTAGCCCAGGCATCAG 85298 Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760 ||| || || || | |||||| || | || || ||| |||||| || || ||||| Sbjct 85297 TCCACGCTTCTTCAACCAAAAGATGGATGCGAAACTTCCACTAAAGAAAATACCTTCCAC 85238 Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTGTTGCTAGATATCCATTTTCT 11817 || || || ||||| || | |||||| | |||| ||||| || ||||| || Sbjct 85237 GGCGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTTGCTTGAAATCCAGTTCAA 85178 Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCA 11844 ||||| ||||||||||| || || || Sbjct 85177 TGCCCAGTCAGCTTTCTTCTTCACACA 85151 >seq4600 Length=436310 Score = 93.3 bits (102), Expect = 4e-14 Identities = 191/284 (67%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||| || | |||||||| || ||||||||||||||||| || |||||||| Sbjct 110531 TACATTTCACTGTGGACGTTTTCCATTGCAATTTGAAATCCATAGAAGCAACGTGCCTCG 110590 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | ||| | ||| || | |||| | | ||||| || | | ||||| | Sbjct 110591 GTGACCTGGAGCTCCTGGCTGAAACGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGAA 110650 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCC 12100 | |||| || || | || |||| || |||| || ||| || | | || ||| Sbjct 110651 GCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTCC 110710 Query 12101 CAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGAT 12160 ||||| ||| |||||| || | ||| ||||| || | ||||| | | |||| ||| Sbjct 110711 CAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGCC 110770 Query 12161 TGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAAT 12204 | || ||||| | ||| || ||||||||| || |||||||| Sbjct 110771 TACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAAAAT 110814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468496940344080