Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4280 466 2e-126 seq98 154 2e-32 seq4600 125 9e-24 seq4284 100 4e-16 >seq4280 Length=912600 Score = 466 bits (516), Expect = 2e-126 Identities = 884/1290 (69%), Gaps = 27/1290 (2%) Strand=Plus/Minus Query 65420 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 65479 ||| || ||||| | || ||||| || || | |||||| || || ||||| ||||| || Sbjct 357167 ATAGGTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGGCACCATA 357108 Query 65480 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 65539 || || ||||||||||| | || ||| || | ||| ||||| ||| || | ||||| Sbjct 357107 GTAGATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTGTCGTAAGGATA 357048 Query 65540 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 65599 | | | ||| || || || || | ||| || ||||| || ||||| || | || | Sbjct 357047 ACGCATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGGCG 356988 Query 65600 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 65659 | |||| || | || ||||| | ||||| ||||||| || || ||||| ||||| Sbjct 356987 CATATTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTTTGTTGAG 356928 Query 65660 ATTTCT---GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATC 65716 ||| | | ||||| |||| | || || |||||||| | |||||| || || || Sbjct 356927 ATTCTTAGTGGCAATT--TTTG-CTACTTCTTTCAGTTTTTGGAAATCATATGTCTTGTC 356871 Query 65717 ---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TA 65771 | | || |||||||||||||| | || || || |||||||| || | |||| | Sbjct 356870 GGGTTTCACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTTCATCCTT 356811 Query 65772 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831 | | | |||| | || || |||||||| || |||||||||||||| | || Sbjct 356810 GGAGGAG--TATTCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCCGATGTTC 356753 Query 65832 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 65891 || |||||||| || |||| || ||||||||||| || ||| | ||| ||| ||||| Sbjct 356752 TGCTGATTACTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACCGGTTTCC 356693 Query 65892 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC-T 65950 | || || || || || || ||| | || | || || | | | |||||| | Sbjct 356692 ACTTGGGACTCGATGATTGCAAACCACAAATCTTGGGCTTTCACTTTCCGAATGTATCGT 356633 Query 65951 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 66010 | || | ||| ||||| ||| |||| | ||| ||||| || ||||| |||| | Sbjct 356632 CCTTCCGCTT-CGTATGATGTGTACAGTTTTTCAAACTCCTCACCCCATG---TGTCGGA 356577 Query 66011 T---CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 66067 | ||||||||||||| || |||||||| |||| ||| ||| | ||| |||||| || Sbjct 356576 TAGCCCAGGACATTCATGAGGGCACATCAAGCACCAGTCTTCGTTAGCCTCCACTCGCTT 356517 Query 66068 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT---ATGTTCCTC 66124 ||| || | ||| ||||||||||| || || | || |||| || || ||| | Sbjct 356516 CATGAACAAATCCGGAATCCAAAGCGCGTAGAACATGTCCCTGGCTCGGACATCTTCAGC 356457 Query 66125 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAA 66184 | || || ||||| || | ||| |||||| | | || ||| |||||||||||| | Sbjct 356456 G---CCGGTGTTCTTCTTTAAATCCAGGAACTCGAAAACATCGCCATGCCACGGTTCGAG 356400 Query 66185 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 66244 || ||||| | | || ||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 356399 ATAAATGGCAAAGGCACCTGGCCGCTTGTTACCTCCCTGATCAACGTACTTGGCAGTGTT 356340 Query 66245 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 66304 ||| || || |||||||| ||||| | ||| ||||| | || || || || | || || Sbjct 356339 ATTGTACACCCTCAACATGGGAATCAAACCGTTGGAAATTCCGTTCGTGCCAGCAATGTA 356280 Query 66305 GCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364 | |||| |||| | || | || || || ||||| || ||| ||| || || Sbjct 356279 GGTTCCCTTTGCTCTGATGCAATGAACATTCAGGCCGATTCCTCCAGCCGATTTCGAAAT 356220 Query 66365 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 66424 || || || | || || || || ||||| ||||| || || || || ||||| | | Sbjct 356219 CAACGCACACTGCTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGCTCATGGTCAA 356160 Query 66425 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 66484 || || ||| |||| || | || | || |||| ||| | || || ||||| Sbjct 356159 CAGGAAGCAGGACGACAGCTGAGGTCGGCAGGTGGCCGCCGCAAACATCGTTGGCGAAGC 356100 Query 66485 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 66544 || || || || | || || || | ||||||||||||||| || | ||| ||||| Sbjct 356099 ATGAGTGAAATATCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGCGTCGATATCTTC 356040 Query 66545 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 66604 || ||||| | || || ||||| ||||||||||| || | ||| ||||||||| Sbjct 356039 GCCGTGGATTCCAATGGCAACCCGCATCAACATGTGCTGTGGCCGTTCCACGATCTTGCC 355980 Query 66605 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 66664 || || || | ||| || ||| ||||| || || || || |||||||| || ||| Sbjct 355979 TTTGATCTTGAGCAAATACGATCGTTCCAGCGTCTTGAAGCCGAAATAGTTATAGCCAAA 355920 Query 66665 GTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 ||| || |||||||| ||| |||| || || Sbjct 355919 GTCCCGATCGTAAATGATAGCCGAATTCAG 355890 >seq98 Length=5729030 Score = 154 bits (170), Expect = 2e-32 Identities = 363/543 (67%), Gaps = 5/543 (1%) Strand=Plus/Plus Query 36194 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 36253 || ||||||| ||| || || || || ||| | || |||||||| || | |||| ||| Sbjct 2603495 ATCAATTCGTAGGAGAATGTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATG 2603554 Query 36254 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 36313 || || || |||| ||||||||| |||| || | || ||||| | | | ||| Sbjct 2603555 GATGCGAAACTTCCACTGAAGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCT 2603614 Query 36314 CCATAACCGGCACTGT--CATGTAT-CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 36370 || | ||| | | | || || ||| || | | | || || ||||| || ||| Sbjct 2603615 CCGAAGTTGGCCTTTTTGCTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACA 2603674 Query 36371 CAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAT 36430 || |||| | || || ||||| || | || | ||| || ||| || ||| Sbjct 2603675 CAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAA 2603734 Query 36431 GTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCG 36490 ||||| || | || |||||||| || | |||||| || |||||||||||||| Sbjct 2603735 GTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCA 2603794 Query 36491 TAGAAACATCTAGCCTCGGTAATCTGTA-CTTCTGTACAAAATCGTTCTGCTAAATTTTC 36549 ||||| || | |||||||| | ||| | || ||| ||| ||||| | | || || Sbjct 2603795 TAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA-CGTTCCACGAGGTTCTC 2603853 Query 36550 ATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 36609 |||| | || || || |||| || |||||||||||| || || | || || Sbjct 2603854 GTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTC 2603913 Query 36610 GTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGT 36669 | || | || || | |||||| | ||||||||| | ||| ||||| || | ||| Sbjct 2603914 GCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGT 2603973 Query 36670 CCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 36729 ||| | ||||||||||||| || ||||| | ||| ||| ||||||| || || || || Sbjct 2603974 CCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAA 2604033 Query 36730 AAT 36732 ||| Sbjct 2604034 AAT 2604036 >seq4600 Length=436310 Score = 125 bits (138), Expect = 9e-24 Identities = 258/381 (68%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 36353 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 36412 || || ||||| || ||||| |||| | || || ||||| || | || | ||| Sbjct 110435 TCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGT 110494 Query 36413 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 36472 || ||| || ||| ||||| || | || |||||||| || | |||||| Sbjct 110495 TTGGAATCACGAATATAAGTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCC 110554 Query 36473 ATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA-CTTCTGTACAAAA 36531 || || ||||||||||| ||||| || | |||||||| | ||| | || ||| ||| Sbjct 110555 ATTGCAATTTGAAATCCATAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA 110614 Query 36532 TCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 36591 ||||| | | || || |||| | || || || |||| || ||||||||||| Sbjct 110615 -CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATG 110673 Query 36592 TTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 36651 | || || | || ||| || | || || | |||||| | ||||||||| | Sbjct 110674 TGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAG 110733 Query 36652 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 36711 ||| ||||| || | |||||| | ||||||||||||| || ||||| | ||| ||| | Sbjct 110734 ATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCC 110793 Query 36712 ATGATATTGAATTGGAAAAAT 36732 |||||| || || || ||||| Sbjct 110794 ATGATACTGGATGGGGAAAAT 110814 >seq4284 Length=891408 Score = 100 bits (110), Expect = 4e-16 Identities = 211/315 (67%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 || |||||| || || ||||| ||||| ||| | ||||||||||| || | || Sbjct 85540 CAGTCTATCAGCCACGAATTCAATATACTGCGACATAAGGTCACAATTCATGCCAAGCAG 85481 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | ||| ||||| || || || || || ||||| || ||| || || ||||| Sbjct 85480 GTCAACCGGAAGGGCTTTCGTCAGGAACTCCTGTTCGATCAGGACTGCTTCGCGGATAAT 85421 Query 36106 AGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 36165 || || ||||| ||| | | | || ||| ||||| | ||| || || Sbjct 85420 CTCGATCACACGTTCTTGTGATGGTTTCTGTACCAGATATTTGAACATAAGACAAGCAAA 85361 Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225 || ||| || || ||||| | || ||||||||||| || || || || ||||| Sbjct 85360 GTCCGTGTGCAGGCCTTCGTCACGTGAGATCAATTCGTTGGAGAATGTTAGCCCAGGCAT 85301 Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 36285 || |||||||| || | |||||| ||||| || || |||| ||||||||| ||||| Sbjct 85300 CAGTCCACGCTTCTTCAACCAAAAGATGGATGCGAAACTTCCACTAAAGAAAATACCTTC 85241 Query 36286 TACTGCCGCAAAGGC 36300 || || || ||||| Sbjct 85240 CACGGCGGCGAAGGC 85226 Score = 98.7 bits (108), Expect = 1e-15 Identities = 179/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 || |||||||| | || |||||||| || | ||||| || || ||||||||| Sbjct 84830 TAAGTATCAATAAGCAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTTGAAAT 84771 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 |||||||| || | || ||||| | ||| || || | || ||||| | | || Sbjct 84770 CCGTAGAAGCAACGCGCTTCGGTGACCTGGACCTCCTGGCTGAAACGTTCCACAAGGTTC 84711 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 36607 || ||||| || || || || ||||| || |||| |||||| || || | || Sbjct 84710 TCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCACATGTGAGATGAAGTGCTTC 84651 Query 36608 TCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 36667 ||| | | || || | |||||| | ||||||||| | ||| ||||| || ||| Sbjct 84650 TCGCCGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAGAGAGATCGACTTCCTCTACT 84591 Query 36668 GTCCAAAATGATGCCTCTGCCT 36689 ||||| || ||||||||||||| Sbjct 84590 GTCCAGAAAGATGCCTCTGCCT 84569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658133663399880