Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq986 122 9e-23 seq4284 93.3 4e-14 seq251 84.2 2e-11 >seq986 Length=4314454 Score = 122 bits (134), Expect = 9e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || ||||||| |||||||| ||||||||||| |||||| Sbjct 1409170 CCACCGCGTAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCGG-- 1409113 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || | | ||| ||||| ||||||||||| || | |||||||| || ||||| |||| Sbjct 1409112 ATAGAGTACGACCATCTTCTAGCTGTTTACCGGCGAAAATCAGACGCTGTTGATCTGGAG 1409053 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| ||||| ||| || || | | || | ||||| | ||||| | Sbjct 1409052 GAATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGA 1408993 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | |||||||| ||||| || || ||||| || |||||| Sbjct 1408992 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATA 1408943 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| | |||| ||||| ||||| || ||||| || || | Sbjct 1408258 CCACCACGCAGACGCAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAC 1408199 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||| |||||||| ||||||||||||| ||||| ||||| Sbjct 1408198 AGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408139 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| || | | ||| | ||||||| ||||| ||| Sbjct 1408138 ATACCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCGACC 1408079 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| |||| || || || || || |||||| Sbjct 1408078 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATA 1408031 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| | || | ||||| || || || ||||| || || | Sbjct 1407802 CCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1407743 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||| Sbjct 1407742 AGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAGACGTTGTTGATCTGGAGGG 1407683 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| || | | ||| | ||||| | ||||| ||| Sbjct 1407682 ATACCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTGTCCGAAGGCTCGACC 1407623 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| |||| || || ||||| || |||||| Sbjct 1407622 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 1407575 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| | || | ||||| || || || ||||| || || | Sbjct 1408486 CCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1408427 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| ||||||||||||||||| ||||||||||||| ||||| ||||| Sbjct 1408426 AGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408367 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || ||| | | || | ||||| | ||||| ||| Sbjct 1408366 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCGACC 1408307 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | || || || || || |||||| Sbjct 1408306 TCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACAAAAATCTGCATA 1408259 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| | || | ||||| || || || ||||| || || | Sbjct 1408942 CCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1408883 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| ||||||||||||||||| ||||||||||||| ||||| ||||| Sbjct 1408882 AGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408823 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || ||| | | || | ||||| | ||||| ||| Sbjct 1408822 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCGACC 1408763 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | || || || || || |||||| Sbjct 1408762 TCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACAAAAATCTGCATA 1408715 >seq4284 Length=891408 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| | || ||| | || |||||| || || | ||| ||||||||||| |||| Sbjct 85128 TCAACGCCATCGATAATCTGCCCTGTGTGAAGAAGAAAGCTGACTGGGCATTGAACTGGA 85187 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 | || | | || |||| || | ||||| | || || || || ||||||||| Sbjct 85188 TTTCAAGCAAAAAGGCCAACTTCGGAGAACGCGTCGTAGCCTTCGCCGCCGTGGAAGGTA 85247 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCC 52710 | || ||| || ||||| || | || |||| | || || | ||| | | ||||| Sbjct 85248 TTTTCTTTAGTGGAAGTTTCGCATCCATCTTTTGGTTGAAGAAGCGTGGAC-TGATGCCT 85306 Query 52711 GGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCG 52770 || || || || |||||| ||||| || || |||||||| ||||||| || ||||| Sbjct 85307 GGGCTAACATTCTCCAACGAATTGATCTCACGTGACGAAGGCCTGCACACGGACTTTGCT 85366 Query 52771 TGT 52773 ||| Sbjct 85367 TGT 85369 >seq251 Length=2698768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||||||||| ||| |||||| ||| |||||||| ||||| || ||||| || Sbjct 664469 TCCTCCAGCTGTTTACCGGCAAAGATCAAACGCTGCTGATCTGGAGGGATACCTTCCTTA 664410 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| | ||||| || |||| || | Sbjct 664409 TCCTGGATCTTAGCCTTGACGTTTTCAATGGTGTCAGAAGGCTCAACTTCAAGAGTGATG 664350 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || |||| || || ||||| || |||||| || Sbjct 664349 GTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATACCT 664311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496034502794400