Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4280 486 3e-132 seq98 179 5e-40 seq4600 143 4e-29 seq4284 107 3e-18 >seq4280 Length=912600 Score = 486 bits (538), Expect = 3e-132 Identities = 1034/1528 (68%), Gaps = 23/1528 (2%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| || |||||||| |||| |||| || |||||| || || || ||||| | Sbjct 357407 TACCTGGAATTCTCCGGACAGCACTCGTCGGTTGTAAACGTTGGAAGTGTACGGTTCGAA 357348 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||| || ||||| | |||||| || || || ||||| ||||| || |||| | | Sbjct 357347 TGATTCGTTGTTTCCAAGAATTTGCGCCGTCGAAGCCGTGGGCATCGGAGCCAGAAGCAG 357288 Query 79179 ACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 ||| | || || ||| | | || || || || | | |||||||||| | Sbjct 357287 GGAATTGCGAACGCC--ATGCTTGGCGATCTTTTCCTTCAAGGCAGCCCAATCCCACATG 357230 Query 79237 TCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCC 79295 || | || | ||||| | ||| || || |||| || || || | || | |||| Sbjct 357229 TCTGTTGGCTCTTTGTTCCACATATCGTACTGCAGAACTCCCTTGCTCACCGGAC-ATCC 357171 Query 79296 TGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355 | || ||||| || | || ||||||||||| |||||||| || || ||||| || || Sbjct 357170 CGGATAGGTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGGCACC 357111 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415 || || || |||||||| || | || ||| || | ||| |||||| ||| || | || Sbjct 357110 ATAGTAGATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTGTCGTAAGG 357051 Query 79416 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 |||| | | ||| || || || || | ||| || ||||| || ||||| || | || Sbjct 357050 ATAACGCATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTG 356991 Query 79476 TCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 79535 | | |||| || | || ||||| | ||||| ||||||| || || ||||| || Sbjct 356990 GCGCATATTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTTTGTT 356931 Query 79536 GAGATTCCT---GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCC 79592 ||||||| | | | ||| |||| | || || || ||||| | |||||| || ||| Sbjct 356930 GAGATTCTTAGTGGCAATT--TTTG-CTACTTCTTTCAGTTTTTGGAAATCATAT-GTCT 356875 Query 79593 A-TC---TATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT 79648 || | | || ||||||||||| |||| || || || |||||||| || | |||| Sbjct 356874 TGTCGGGTTTCACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTTCAT 356815 Query 79649 --TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAA 79706 | | | | |||| | ||||| ||||| ||||| ||||| |||||||| | Sbjct 356814 CCTTGGAGGAG--TATTCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCCGAT 356757 Query 79707 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGT 79766 || || |||||||| || |||| || ||||||||||| || ||| ||||| ||| || Sbjct 356756 GTTCTGCTGATTACTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACCGGT 356697 Query 79767 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTA 79826 ||| | || || || || || || ||| | || | || || | | | |||| Sbjct 356696 TTCCACTTGGGACTCGATGATTGCAAACCACAAATCTTGGGCTTTCACTTTCCGAATGTA 356637 Query 79827 TC-TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGT 79885 || || || | ||| ||||| ||| || | | ||| ||||| || ||||| ||| Sbjct 356636 TCGTCCTTCCGCTT-CGTATGATGTGTACAGTTTTTCAAACTCCTCACCCCATGTGTCGG 356578 Query 79886 CTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTT 79945 || ||||||||||| | ||| |||||||| |||| ||| | | | ||| ||||| | Sbjct 356577 ATAGCCCAGGACATTCATGAGGGCACATCAAGCACCAGTCTTCGTTAGCCTCCACTCGCT 356518 Query 79946 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 80005 |||| || | ||| ||||||||||| || || | || |||| || || || Sbjct 356517 TCATGAACAAATCCGGAATCCAAAGCGCGTAGAACATGTCCCTGGCTCGGACATCTTCAG 356458 Query 80006 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 80065 || || ||||| || | ||| |||||| | | || ||| |||||||||||| | | Sbjct 356457 CGCCGGTGTTCTTCTTTAAATCCAGGAACTCGAAAACATCGCCATGCCACGGTTCGAGAT 356398 Query 80066 ATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 80125 | ||||| | | || || || ||||| ||||||||||| | ||| | || ||||||| Sbjct 356397 AAATGGCAAAGGCACCTGGCCGCTTGTTACCTCCCTGATCAACGTACTTGGCAGTGTTAT 356338 Query 80126 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 80185 | || || |||||||| ||||| | ||| ||||| | || || || || | || ||| Sbjct 356337 TGTACACCCTCAACATGGGAATCAAACCGTTGGAAATTCCGTTCGTGCCAGCAATGTAGG 356278 Query 80186 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245 |||| | || | || | || || || ||||| || ||| ||| || || | Sbjct 356277 TTCCCTTTGCTCTGATGCAATGAACATTCAGGCCGATTCCTCCAGCCGATTTCGAAATCA 356218 Query 80246 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTA 80305 | || || | || || || || ||||| ||||| ||||| || || ||||| | | | Sbjct 356217 ACGCACACTGCTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGCTCATGGTCAACA 356158 Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 | || ||| |||| || | || | || |||| ||| | || || ||||| | Sbjct 356157 GGAAGCAGGACGACAGCTGAGGTCGGCAGGTGGCCGCCGCAAACATCGTTGGCGAAGCAT 356098 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 | || || || | || ||||| | ||||||||||||||| || | || ||||| Sbjct 356097 GAGTGAAATATCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGCGTCGATATCTTCGC 356038 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 || ||||| | || || ||||| ||||||||||| || | ||| ||||||||| | Sbjct 356037 CGTGGATTCCAATGGCAACCCGCATCAACATGTGCTGTGGCCGTTCCACGATCTTGCCTT 355978 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | || || | ||| || ||| ||||| || || || || |||||||| || ||||| Sbjct 355977 TGATCTTGAGCAAATACGATCGTTCCAGCGTCTTGAAGCCGAAATAGTTATAGCCAAAGT 355918 Query 80546 CTCGTTCGTAAATAATAACCGAGTTGAG 80573 | || |||||||| ||| |||| || || Sbjct 355917 CCCGATCGTAAATGATAGCCGAATTCAG 355890 >seq98 Length=5729030 Score = 179 bits (198), Expect = 5e-40 Identities = 575/885 (65%), Gaps = 9/885 (1%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 |||||| ||| || || || || || || || || || || |||||||| ||||| Sbjct 2603155 CATAACACCCCACTTCTGATACTCTCCTACTTTCTTCTCAAAGAAGTTAGTTTTACCTTC 2603214 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 | || || ||||| ||| ||| ||||| | ||| ||||| || | | | Sbjct 2603215 AAGCGAAATGAACTCCATAAAACTAAAGGGATTCTTCGTATTGTAAATCTTATCGATGAC 2603274 Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835 ||| || | || || ||| || || ||||| ||||| || | |||||||| Sbjct 2603275 CAACTCGAGCAGCAGTCCATCAGCCACGAATTCAATATACTGCGACAAAAGGTCACAATT 2603334 Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895 ||| || | || | ||| ||||| | || || ||||| |||| || || | Sbjct 2603335 CATGCCAAGCAGGTCAACCGGAAGGGTTTTCGTCAGGAATTCCTGTTTGATCAGGACTGT 2603394 Query 49896 ATCTGTTATAA--TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 || |||| | |||| | | ||||| ||| || | | || ||| ||| Sbjct 2603395 TTCGCGGATAAACTCGATCACATG--TTCTTGTGATGGTTTCTGTACCAGATATTTGAAC 2603452 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 || | | | | || || |||||| || ||||| | || | ||||| ||| || Sbjct 2603453 ATAAGAGAAACAAATTCCATGTGCAGGCCTTCGTCACGTGAGATCAATTCGTAGGAGAAT 2603512 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 || || || ||| | || |||||||| || | |||| ||||| || || ||| Sbjct 2603513 GTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATGGATGCGAAACTTCCACTG 2603572 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT-- 50131 ||||| ||| |||| || |||| ||||| || | | ||||| | |||| | | Sbjct 2603573 AAGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTTG 2603632 Query 50132 CATGTAT-CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | || || ||| || | | | || || ||||| || ||||| |||| | || ||| Sbjct 2603633 CTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACACAGGGCAGATTATCGATG 2603692 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 ||||| || | || | ||| || ||| || |||||||||||| | || Sbjct 2603693 GCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAAGTATCGATAAGCAGCGAG 2603752 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| || | |||||| || ||||| |||||||| ||||| || | |||||| Sbjct 2603753 TACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCATAGAAGCAACGTGCCTCG 2603812 Query 50311 GTAATCTGCA-CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 || | ||| | || ||| ||| ||||| | | || || |||| | || || Sbjct 2603813 GTGACCTGGAGCTCCTGGCTGAAA-CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGA 2603871 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429 || |||| || |||||||||||| || || || || ||| | | || || | Sbjct 2603872 AGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTC 2603931 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 |||||| | ||||||||| | ||| ||||| || | |||||| | ||||||||||| Sbjct 2603932 CCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGC 2603991 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 || || ||||| | ||| ||| ||||||| ||||| |||||||| Sbjct 2603992 CTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAAAAT 2604036 >seq4600 Length=436310 Score = 143 bits (158), Expect = 4e-29 Identities = 262/381 (69%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 50155 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 50214 || || ||||| || ||||| |||| | || |||||||| || | || | ||| Sbjct 110435 TCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGT 110494 Query 50215 TTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 50274 || ||| || |||||||||||| | || |||||||| || | |||||| Sbjct 110495 TTGGAATCACGAATATAAGTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCC 110554 Query 50275 ATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA-CTTCTGTACAAAA 50333 || || || |||||||| ||||| || | |||||||| | ||| | || ||| ||| Sbjct 110555 ATTGCAATTTGAAATCCATAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA 110614 Query 50334 TCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 50393 ||||| | | || || |||| | || || || |||| || ||||||||||| Sbjct 110615 -CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATG 110673 Query 50394 TTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 50453 | || || || || ||| | | || || | |||||| | ||||||||| | Sbjct 110674 TGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAG 110733 Query 50454 ATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 50513 ||| ||||| || | |||||| | ||||||||||||| || ||||| | ||| ||| | Sbjct 110734 ATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCC 110793 Query 50514 ATGATATTGGATTGGGAAAAT 50534 |||||| ||||| |||||||| Sbjct 110794 ATGATACTGGATGGGGAAAAT 110814 >seq4284 Length=891408 Score = 107 bits (118), Expect = 3e-18 Identities = 276/416 (66%), Gaps = 7/416 (2%) Strand=Plus/Minus Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || |||||| || || ||||| ||||| ||| | ||||||||||| || | || Sbjct 85540 CAGTCTATCAGCCACGAATTCAATATACTGCGACATAAGGTCACAATTCATGCCAAGCAG 85481 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA- 49906 | ||| ||||| || || || || || ||||| || || || || |||| Sbjct 85480 GTCAACCGGAAGGGCTTTCGTCAGGAACTCCTGTTCGATCAGGACTGCTTCGCGGATAAT 85421 Query 49907 -TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 49965 | |||| ||| ||||| ||| || | | || ||| ||||| | ||| || Sbjct 85420 CTCGATCACACG--TTCTTGTGATGGTTTCTGTACCAGATATTTGAACATAAGACAAGCA 85363 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 || || |||||| || ||||| | || | ||||||||| || || || || ||| Sbjct 85362 AAGTCCGTGTGCAGGCCTTCGTCACGTGAGATCAATTCGTTGGAGAATGTTAGCCCAGGC 85303 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCT 50085 || || |||||||| || | |||||| ||||| || || ||| |||||| || ||| Sbjct 85302 ATCAGTCCACGCTTCTTCAACCAAAAGATGGATGCGAAACTTCCACTAAAGAAAATACCT 85243 Query 50086 TCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT--CATG-TATCCAC 50142 || || ||||| ||||| || | | ||||| | |||| | | | || ||||| Sbjct 85242 TCCACGGCGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTTGCTTGAAATCCAG 85183 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 || ||||| || || ||||| || ||||| |||| | || ||||| || || Sbjct 85182 TTCAATGCCCAGTCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCGTTGAA 85127 Score = 104 bits (114), Expect = 3e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 |||||||| || | || |||||||| || | ||||| || || || |||||| Sbjct 84830 TAAGTATCAATAAGCAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTTGAAAT 84771 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 |||||||| || | || ||||| | ||| || || | || ||||| | | || Sbjct 84770 CCGTAGAAGCAACGCGCTTCGGTGACCTGGACCTCCTGGCTGAAACGTTCCACAAGGTTC 84711 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 || ||||| || || || || ||||| || |||| |||||| || || || || Sbjct 84710 TCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCACATGTGAGATGAAGTGCTTC 84651 Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 50469 ||| || | || || | |||||| | ||||||||| | ||| ||||| || ||| Sbjct 84650 TCGCCGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAGAGAGATCGACTTCCTCTACT 84591 Query 50470 GTCCAAAATGATGCCTCTGCCT 50491 ||||| || ||||||||||||| Sbjct 84590 GTCCAGAAAGATGCCTCTGCCT 84569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718226089941480