Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq98 141 9e-29 seq4284 107 2e-18 seq4600 102 8e-17 >seq98 Length=5729030 Score = 141 bits (156), Expect = 9e-29 Identities = 533/826 (65%), Gaps = 10/826 (1%) Strand=Plus/Plus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 ||||| ||| || ||||| || | ||| | || ||||| ||||||||||||||||| Sbjct 2603156 ATAACACCCCACTTCTGATACTCTCCTACTTTCTTCTCAAAGAAGTTAGTTTTACCTTCA 2603215 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATC-ACAACC 13475 || || || ||||||||| || ||||| | | | | | ||||| | ||| Sbjct 2603216 AGCGAAATGAACTCCATAAAACTAAAGGGATTCTTCGTATTGTAAATCTTATCGATGACC 2603275 Query 13476 TAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT 13535 | | | | | | || |||||| | || |||||||| || |||| | |||||||| Sbjct 2603276 AACT-CGAGCAGCAGTCCATCAGCCACGAATTCAATATACTGCGACAAAAGGTCACAATT 2603334 Query 13536 CATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGC 13595 ||| || | || | || |||| | || || | ||||| | || || || | Sbjct 2603335 CATGCCAAGCAGGTCAACCGGAAGGGTTTTCGTCAGGAATTCCTGTTTGATCAGGACTGT 2603394 Query 13596 CTCGTTTATAATAATCTTAATAATGTCATTA-GAAGGAGGATATTTTAGATGTTTAAAAA 13654 ||| |||| | || |||| || || || | | |||| ||| || | Sbjct 2603395 TTCGCGGATAA-ACTCGATCACATGTTCTTGTGATGGTTTCTGTACCAGATATTTGAACA 2603453 Query 13655 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13714 | | | | |||| || || ||||| || || | || | ||||| || |||| Sbjct 2603454 TAAGAGAAACAAATTCCATGTGCAGGCCTTCGTCACGTGAGATCAATTCGTAGGAGAATG 2603513 Query 13715 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 13774 ||| || ||| ||| ||| || || || |||||| || | ||||| ||| | Sbjct 2603514 TTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATGGATGCGAAACTTCCACTGA 2603573 Query 13775 AGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT 13834 |||| ||| | || || | || || |||| | |||||||| || || |||||| Sbjct 2603574 AGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTTGC 2603633 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 |||| |||| || | | |||||| ||| || || | | | || | ||||| | Sbjct 2603634 TTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGG 2603693 Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA- 13953 ||||||| || | ||| | | ||| | | ||| || ||||| ||||| | || | Sbjct 2603694 CATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAAGTATCGATAAGCA-GCGAG 2603752 Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC- 14012 ||||||||| ||| | |||||| || || || ||||| ||||| || || | || || Sbjct 2603753 TACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCATAGAAGCAACGTGCCTCG 2603812 Query 14013 -TGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071 ||||| || | |||| | || | ||| | | ||| || || | | ||||| Sbjct 2603813 GTGACC--TGGAGCTCCTGGCTGAAACGTTCCACGAGGTTCTCGTTCATGCTGCCATCGG 2603870 Query 14072 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14131 ||| |||| || ||||||| | | || |||| | ||| | ||||| |||| Sbjct 2603871 AAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTT 2603930 Query 14132 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177 ||||||||||| ||| ||||| ||||| ||||| || | |||||| Sbjct 2603931 CCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCA 2603976 >seq4284 Length=891408 Score = 107 bits (118), Expect = 2e-18 Identities = 180/256 (70%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCT 13987 |||||| ||||||||||| ||| | ||||||||| ||| | ||||| || || || | Sbjct 84834 AATGTAAGTATCAATAAG-CAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTT 84776 Query 13988 GAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACCTCCGAGTAAAATCTTTCTGC 14045 |||| || || || || | ||||| ||||| || |||||| | || | ||| | Sbjct 84775 GAAATCCGTAGAAGCAACGCGCTTCGGTGACC--TGGACCTCCTGGCTGAAACGTTCCAC 84718 Query 14046 CAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14105 | ||| || || || || ||||| ||| ||||| || |||| | | | || || Sbjct 84717 AAGGTTCTCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCACATGTGAGATGAA 84658 Query 14106 GTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14165 || | ||| | ||||| |||| ||||||||| | ||| ||||| ||||| ||||| Sbjct 84657 GTGCTTCTCGCCGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAGAGAGATCGACTTC 84598 Query 14166 ATCAACTGTCCAAAAA 14181 || |||||||| ||| Sbjct 84597 CTCTACTGTCCAGAAA 84582 >seq4600 Length=436310 Score = 102 bits (112), Expect = 8e-17 Identities = 239/356 (67%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 13825 GCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 13884 || |||||| |||| |||| || | | |||||| ||| || || | | | || Sbjct 110402 GCCTTTTTGCTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACACAGGGCAGA 110461 Query 13885 GTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATA 13944 | ||||| |||||||| || | ||| | | ||| | | ||| || ||||| ||| Sbjct 110462 TTATCGATGGCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAAGTATCGATA 110521 Query 13945 AGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 || | || | ||||||||| ||| | |||||| || || || ||||| ||||| || || Sbjct 110522 AGCA-GCGAGTACATTTCACTGTGGACGTTTTCCATTGCAATTTGAAATCCATAGAAGCA 110580 Query 14004 TCTAGCTTC--TGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACA 14061 | || || ||||| || | |||| | || | ||| | | ||| || || | Sbjct 110581 ACGTGCCTCGGTGACC--TGGAGCTCCTGGCTGAAACGTTCCACGAGGTTCTCGTTCATG 110638 Query 14062 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14121 | ||||| ||| |||| || ||||||| | | || |||| | ||| | Sbjct 110639 CTGCCATCGGAAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGAC 110698 Query 14122 TTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177 ||||| |||| ||||||||||| ||| ||||| ||||| ||||| || | |||||| Sbjct 110699 TTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCA 110754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478560341913480